View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_high_11 (Length: 302)
Name: NF7591_high_11
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 8940503 - 8940262
Alignment:
| Q |
22 |
gtccttctatccattacaccaacacctaccttcataaatatccaaacttgcaaaaacaaaagtggcatattaattaggtcaccgttattaataataattt |
121 |
Q |
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| T |
8940503 |
gtccttctatccatcacaccaacacctaccttcataaatatccaaacttgcaaaaacaaaagtggcatattaattatgtcaccgttattaataataattt |
8940404 |
T |
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| Q |
122 |
ctctaattttttcagtttttagactnnnnnnnttcatggaaaccaacaaattaaaggtgatac-nnnnnnnnnaatggttcaaacaaaggtgatacttaa |
220 |
Q |
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| T |
8940403 |
ctc---ttttttcagtttttagactaaaataattcatggaaaccaacaaattaaaggtgatacttttttttttaatggttcaaacaaaggtgatacttaa |
8940307 |
T |
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| Q |
221 |
aattcaatcaaatgaactattgggtacaaaatatttttatttaat |
265 |
Q |
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| T |
8940306 |
aattcaatcaaatgaactattgggtgcaaaatatttttatttaat |
8940262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 8927997 - 8927929
Alignment:
| Q |
22 |
gtccttctatccattacaccaacacctaccttcataaatatccaaacttgcaaaaacaaaagtggcata |
90 |
Q |
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| T |
8927997 |
gtccttctatccatgacaccaacacctaccttcataaatatccaaacttgcaaaaataaaagtgccata |
8927929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 8927875 - 8927828
Alignment:
| Q |
211 |
tgatacttaaaattcaatcaaatgaactattgggtacaaaatattttta |
259 |
Q |
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| T |
8927875 |
tgatacataaaattcaatcaaaagaactaatgggtac-aaatattttta |
8927828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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