View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_high_23 (Length: 212)
Name: NF7591_high_23
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 12502852 - 12503014
Alignment:
| Q |
42 |
acttgaaaagagaaataattttcattcccgtaaacaatcgctaaacaatttttgctgcatatcaaacttttttataatcacttttatttctaactttgaa |
141 |
Q |
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| T |
12502852 |
acttgaaaagagaaataattttcattcccgtaaacaatcactaaacaatttttgctgcatatcaaacttttttataatcactttgatttctaactttgaa |
12502951 |
T |
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| Q |
142 |
agtcaatacnnnnnnnnaacaagctaaaatggaattaataaatcaaaatgagtgattcatctc |
204 |
Q |
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| T |
12502952 |
agtcaatacttttttttaacaagccaaaatggaattaatagatcaaaaggagtgattcatctc |
12503014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 32122529 - 32122484
Alignment:
| Q |
159 |
aacaagctaaaatggaattaataaatcaaaatgagtgattcatctc |
204 |
Q |
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| T |
32122529 |
aacaagccaaaatggaattaataaatcaagaggagtggttcatctc |
32122484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 4637742 - 4637698
Alignment:
| Q |
159 |
aacaagctaaaatggaattaataaatcaaaatgagtgattcatct |
203 |
Q |
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| T |
4637742 |
aacaagccaaaatggaattaataaatcaaaaggagtggttcatct |
4637698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 8460852 - 8460806
Alignment:
| Q |
159 |
aacaagctaaaatggaattaat-aaatcaaaatgagtgattcatctc |
204 |
Q |
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||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
8460852 |
aacaagccaaaatggaattaattaaaacaaaatgagtgattcatctc |
8460806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 26649890 - 26649935
Alignment:
| Q |
159 |
aacaagctaaaatggaattaataaatcaaaatgagtgattcatctc |
204 |
Q |
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||||||| ||||||||||||||| ||||||| |||| ||||||||| |
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| T |
26649890 |
aacaagccaaaatggaattaatatatcaaaaggagttattcatctc |
26649935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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