View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_high_3 (Length: 502)
Name: NF7591_high_3
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 23852953 - 23853420
Alignment:
| Q |
19 |
acttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852953 |
acttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctc |
23853052 |
T |
|
| Q |
119 |
tcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853053 |
tcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttc |
23853152 |
T |
|
| Q |
219 |
tatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcatttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853153 |
tatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcatttt |
23853252 |
T |
|
| Q |
319 |
attatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacacc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853253 |
attatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacacc |
23853352 |
T |
|
| Q |
419 |
ttatattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
486 |
Q |
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| T |
23853353 |
ttatattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
23853420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 23752252 - 23752535
Alignment:
| Q |
19 |
acttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctc |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||| |||| |||| |
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|
| T |
23752252 |
acttatacctttccatttacaacattcatttccttcccaagaggaaagtcttaatgatgtatcattaaagcttcctttgagttcaagaagtgcttgcctc |
23752351 |
T |
|
| Q |
119 |
tcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttc |
218 |
Q |
| |
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|||||||| |||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |||||||| ||||||| |||||||||||| |
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| T |
23752352 |
tcttgttctatgcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaagggaaacaacaacaaaagcataactttggtttc |
23752451 |
T |
|
| Q |
219 |
tatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaatagg |
307 |
Q |
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||| ||||||| ||||||| || ||||||| |||| |||| ||||||||||||| | ||| |||||||||||||||||||||| |
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|
| T |
23752452 |
tatgcatatttgagggaagtgaatgaagcaacgctgtaagttgggtgggcacaacg-----gggactcaaccaacacaacttaaatagg |
23752535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 22619645 - 22619863
Alignment:
| Q |
19 |
acttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctc |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||| | | | |||||||| |||| |
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|
| T |
22619645 |
acttatacctttccatttacaacattcatttccttcccaagaggaaagtcttaatgatgtatcattaaagcttcctttgagtgctaaaagagcttgcctc |
22619744 |
T |
|
| Q |
119 |
tcttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttc |
218 |
Q |
| |
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|||||||| | |||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |||||||| ||||||| |||||||||||| |
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| T |
22619745 |
tcttgttctaagcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaagggaaacaacaacaaaagcataactttggtttc |
22619844 |
T |
|
| Q |
219 |
tatccatatttaagggaag |
237 |
Q |
| |
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||| ||||||| ||||||| |
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|
| T |
22619845 |
tatgcatatttgagggaag |
22619863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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