View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_low_10 (Length: 317)
Name: NF7591_low_10
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 33237273 - 33237562
Alignment:
| Q |
9 |
tggtgttggttataacactcttgatgttccttctttgtctgatgcattgcaagatattcctgttgctgtttattggataattgcttccgttgttgctgct |
108 |
Q |
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| T |
33237273 |
tggtgttggttataacactcttgatgttccttctttgtctgatgcattgcaagatattcctgttgctgtttattggataattgcttccactgttgctgct |
33237372 |
T |
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| Q |
109 |
accggcaatatcattggtgtatcgtaagttatatatcttcttttcgttccattttggttccttaagttataaatgtaagacacctaggtccgttaagttt |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237373 |
actggcaatatcattggtgtatcgtaagttatatatcttcttttcgttccattttggttccttaagttataaatgtaagacacctaggtccgttaagttt |
33237472 |
T |
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| Q |
209 |
atttttcgttctattttagtttcttgatcactaagttatagatgttagacgctttagtcatttctgtcagttttttaaatgagttcgtcat |
299 |
Q |
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| T |
33237473 |
atttttcgttctattttagtttcttaatcacaaagttatagatgttagacgctttagtcatttctgtcagtttttt-tatgagttcgtcat |
33237562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 33221453 - 33221540
Alignment:
| Q |
29 |
ttgatgttccttctttgtctgatgcattgcaagatattcctgttgctgtttattggataattgcttccgttgttgctgctaccggcaa |
116 |
Q |
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| T |
33221453 |
ttgatgttcctgctttgacagacgccttgcaagaaattcctgtctttgtttattggacaattgcttccattgttgcttctactggcaa |
33221540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 14929041 - 14929094
Alignment:
| Q |
31 |
gatgttccttctttgtctgatgcattgcaagatattcctgttgctgtttattgg |
84 |
Q |
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| T |
14929041 |
gatgttcctgctttgtctgaagctatgcaagagattcctgttgctgtttattgg |
14929094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 26376557 - 26376680
Alignment:
| Q |
9 |
tggtgttggttataacactcttgatgttccttctttgtctgatgcattgcaagatattcctgttgctgtttattggataattgcttccgttgttgctgct |
108 |
Q |
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|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||| |
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| T |
26376557 |
tggtgttggttatattactcttgaaattccttgtttgtctgatgcattgcaagatattcctgttgctgtttattggataactgcttccattattgccgct |
26376656 |
T |
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| Q |
109 |
accggcaatatcattggtgtatcg |
132 |
Q |
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| ||||| | |||| |||||||| |
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| T |
26376657 |
attggcaacaacattagtgtatcg |
26376680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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