View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_low_11 (Length: 308)
Name: NF7591_low_11
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 48980109 - 48980382
Alignment:
| Q |
19 |
gttaccaaacaatgaataaactatatttgtgtggagaaagaaactctcttgtttaactagggcaagggtatgttgtgagagatgagagaagtaatggttt |
118 |
Q |
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| T |
48980109 |
gttacaaaacaatgaataaactatatttgtgtggagaaagaaactatcttgtttaactagggcaagggtatgttgtgagagatgagagaagtaatggttt |
48980208 |
T |
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| Q |
119 |
ggggttgttaaataatataatagtgagaggatgttatgtgataataatagtatagtacaataataatttgcaaacatggaaatctaaatgcagagtgaga |
218 |
Q |
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| T |
48980209 |
ggggttgttaaataatataatagtgagaggatgttatgtgataataatagtatagtacaataataatttgcaaacatggaaatctaaatgcagagtgaga |
48980308 |
T |
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| Q |
219 |
tggagattctggagcagtatggaatgataatagtgttgaaattaa-----tttatttatttgagtgatgccttttcaatttcat |
297 |
Q |
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| T |
48980309 |
tagagattc----------tggaatgataatagtgttgaaattaattaatttaatttatttgagtgatgccttttcaatttcat |
48980382 |
T |
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