View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_low_15 (Length: 274)
Name: NF7591_low_15
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 35406632 - 35406872
Alignment:
| Q |
16 |
atgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttctatagaaaattgctaatctctgtttgagaaatgggta |
115 |
Q |
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| T |
35406632 |
atgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttctatagaaaattgctaatctctgtttgagaaatgggta |
35406731 |
T |
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| Q |
116 |
ttcaaggaagacaaagaagacaaacctccaaatctagttcaaagtacatgatttggttcatgatatatcttgctcgctatgttgcaaaagaggagtttgt |
215 |
Q |
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| T |
35406732 |
ttcaaggaagacgaagaagacaaacctccaaatctagttcaaagtacatgatttggtgcatgatatatcttgctctctatgttgcaaaagaggagtttgt |
35406831 |
T |
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| Q |
216 |
agcagttaaatcccattttcctagattacctgagcaagtaa |
256 |
Q |
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| T |
35406832 |
agcagttaaatcccattttcttagattacctgagcaagtaa |
35406872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 18117903 - 18117767
Alignment:
| Q |
18 |
gcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttctatagaaaattgctaatctctgtttgagaaatgggtatt |
117 |
Q |
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||||||| |||||||||| ||||||||| | |||||| ||||||||||||||| |||||||||| ||||| || | |||| |||||| |||||||| ||| |
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| T |
18117903 |
gcagcaactcaattgcatcgatgatgggtactgttccctcctatgttttaaaaggcctttctattgaaaactgtttatctttgtttgtgaaatgggcatt |
18117804 |
T |
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| Q |
118 |
caaggaagacaaagaagacaaacctccaaatctagtt |
154 |
Q |
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| T |
18117803 |
caaggaaggcgaagaagacaaatatccaaatctagtt |
18117767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 18117366 - 18117265
Alignment:
| Q |
151 |
agttcaaagtacatgatttggttcatgatatatcttgctcgctatgttgcaaaagaggagtttgtagcagttaaatcccattttcctagattacctgagc |
250 |
Q |
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||||||||||||| |||||||| |||||| |||||| ||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
18117366 |
agttcaaagtacacgatttggtacatgat----cttgctttctatgttgcaaaaaaggagtttgtagtggttaaatcccacattcttagattacctgagc |
18117271 |
T |
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| Q |
251 |
aagtaa |
256 |
Q |
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||||| |
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| T |
18117270 |
gagtaa |
18117265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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