View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7591_low_17 (Length: 251)
Name: NF7591_low_17
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8718306 - 8718542
Alignment:
| Q |
1 |
aacattgaaaagtcattgatagggttttaataagatacctaaaaagaacagtgaaccttcgattacattatcaaaggtttctcattgtctaggaagaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8718306 |
aacattgaaaagtcattgatagggttttaa---gatacctaaaaagaacagtgaaccttggattacattatcaaaggtttctcattgtctaggaagaata |
8718402 |
T |
|
| Q |
101 |
cacatatgcaactttgaacaccgtccaaagcgaccagtggatatatatttagtatcgcttggggagttgtttcttataaacctaaaaaacagactatatt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
8718403 |
cacatatgcaactttgaacaccatccaaagcgaccagtggatatatatttagtatcgcttgaggagttgtttcttataaatctaagaaacagactatatt |
8718502 |
T |
|
| Q |
201 |
agcccagtctactataaagtctgagatgatatcactaaca |
240 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8718503 |
agcccagtctactatgaagtctgagatgatatcactaaca |
8718542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 4436737 - 4436770
Alignment:
| Q |
205 |
cagtctactataaagtctgagatgatatcactaa |
238 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
4436737 |
cagtctactatagagtctgagatgatatcactaa |
4436770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 17359650 - 17359601
Alignment:
| Q |
124 |
tccaaagcgaccagtggatatatatttagtatcgcttggggagttgtttc |
173 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||| | ||||||||||| |
|
|
| T |
17359650 |
tccaaagcgaccagtggctatatatttagcattgctggaggagttgtttc |
17359601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 17364292 - 17364243
Alignment:
| Q |
124 |
tccaaagcgaccagtggatatatatttagtatcgcttggggagttgtttc |
173 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||| | ||||||||||| |
|
|
| T |
17364292 |
tccaaagcgaccagtggctatatatttagcattgctggaggagttgtttc |
17364243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University