View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7591_low_20 (Length: 242)

Name: NF7591_low_20
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7591_low_20
NF7591_low_20
[»] chr8 (4 HSPs)
chr8 (6-240)||(8717956-8718188)
chr8 (107-236)||(4540069-4540198)
chr8 (45-236)||(6009513-6009708)
chr8 (45-236)||(19951728-19951919)
[»] chr1 (1 HSPs)
chr1 (71-172)||(17133476-17133578)
[»] chr3 (2 HSPs)
chr3 (45-174)||(43556179-43556311)
chr3 (112-169)||(17365379-17365436)
[»] chr7 (3 HSPs)
chr7 (71-142)||(4436257-4436328)
chr7 (191-230)||(24944465-24944504)
chr7 (112-164)||(15235291-15235343)
[»] chr6 (2 HSPs)
chr6 (45-142)||(17286082-17286182)
chr6 (45-174)||(10489794-10489926)
[»] chr5 (3 HSPs)
chr5 (74-226)||(25687215-25687366)
chr5 (112-174)||(17506729-17506791)
chr5 (112-164)||(17548790-17548842)
[»] chr2 (2 HSPs)
chr2 (65-164)||(13289034-13289134)
chr2 (107-149)||(32081423-32081465)
[»] chr4 (1 HSPs)
chr4 (112-174)||(54993249-54993311)
[»] scaffold0011 (1 HSPs)
scaffold0011 (45-164)||(3700-3822)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 8717956 - 8718188
Alignment:
Q  6 attagtggttgtttaagaggtaggttatgttgtatatataactttgatatgaaagacctcgaagttaatgtaatttttggtattaaaattactaggtcag 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||| |||||||||    
T  8717956 attagtggttgtttaagaggtagattatgttgtatatataactttgatatgaaagtcct--aagttaatgtaattcttggtattaaaattgctaggtcag 8718053  T
Q  106 aaaagagaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactttgattacaaacttatttgcataccatatgatccaag 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||    
T  8718054 aaaagagaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactttgattacaaacttatttgaatacgatatgatctaag 8718153  T
Q  206 tataaaactattcaagaacactggtaaaagtttga 240  Q
    |||||||||||||||||||||||||||||||||||    
T  8718154 tataaaactattcaagaacactggtaaaagtttga 8718188  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 4540069 - 4540198
Alignment:
Q  107 aaagagaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactttgattacaaacttatttgcataccatatgatccaagt 206  Q
    ||||||||||||||||||| |||||| |||| ||||| |||||   |||||||||||  ||||||| | ||||| || ||||| ||||||||||||| ||    
T  4540069 aaagagaatttccttggatcaatctcgctatattgagaagatcttgaggaaatataaatactttgactgcaaacctacttgcacaccatatgatccatgt 4540168  T
Q  207 ataaaactattcaagaacactggtaaaagt 236  Q
      ||||||||| | |||||||||| |||||    
T  4540169 gaaaaactatttaggaacactggtgaaagt 4540198  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 6009513 - 6009708
Alignment:
Q  45 aactttgatatgaaagacctc---gaagttaatgtaatttttggtattaaaattactaggtcagaaaa-gagaatttccttggattaatctcactatgtt 140  Q
    |||||||||||||||||| ||   |||| |||||||||| ||||||||||||||| |||| || |||| | || ||| ||| ||| || |||||||||||    
T  6009513 aactttgatatgaaagacttcatagaagctaatgtaattcttggtattaaaattattaggccaaaaaaagggatttttctttgatcaacctcactatgtt 6009612  T
Q  141 gaggagatcactaggaaatataataactttgattacaaacttatttgcataccatatgatccaagtataaaactattcaagaacactggtaaaagt 236  Q
    ||| |||||   |  ||||||||| | ||||| | ||||| || ||||| |||| ||| ||||| | |||||||||| |||||||||||| |||||    
T  6009613 gagaagatcttcaaaaaatataattattttgactgcaaacctacttgcacaccacatgttccaaatgtaaaactatttaagaacactggtgaaagt 6009708  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 19951919 - 19951728
Alignment:
Q  45 aactttgatatgaaagacctc---gaagttaatgtaatttttggtattaaaattactaggtcagaaaagagaatttccttggattaatctcactatgttg 141  Q
    |||||||||||||||||| ||   |||| |||||||||| | ||||||||  |||  |||| |||||||||||||||||||||| |||||| ||| ||||    
T  19951919 aactttgatatgaaagacatcagagaagataatgtaattatgggtattaa--ttaacaggttagaaaagagaatttccttggatcaatctcgctaagttg 19951822  T
Q  142 aggagatcactaggaaatataataactttgattacaaacttatttgcataccatatgatccaagtataaaactattcaagaacactggtaaaagt 236  Q
    || |||||   |||||||||||  ||||| | | ||||| |  ||||| ||||||||||||| ||  |||||| || | |||||||||| |||||    
T  19951821 agaagatcttgaggaaatataaatacttttactgcaaacctgcttgcacaccatatgatccatgtgaaaaactgtt-aggaacactggtgaaagt 19951728  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 17133476 - 17133578
Alignment:
Q  71 taatgtaatttttggtattaaaattactaggtcag-aaaagagaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactt 169  Q
    |||| |||||||||||||||||||||| ||||||| ||||| |||||||||  ||| ||||||| ||||||||| |||||   |||||||||||| ||||    
T  17133476 taatataatttttggtattaaaattacaaggtcagaaaaagtgaatttcctacgatcaatctcattatgttgagaagatcttaaggaaatataattactt 17133575  T
Q  170 tga 172  Q
    |||    
T  17133576 tga 17133578  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 43556311 - 43556179
Alignment:
Q  45 aactttgatatgaaagacctc---gaagttaatgtaatttttggtattaaaattactaggtcagaaaagagaatttccttggattaatctcactatgttg 141  Q
    |||||| ||||||||||||||   |||  |||||||||  |||||||| | |||| |||||||| |||  |||||||||| ||| |||||||||||||||    
T  43556311 aactttaatatgaaagacctctgagaatctaatgtaatccttggtattgagattattaggtcaggaaatggaatttccttagatcaatctcactatgttg 43556212  T
Q  142 aggagatcacta-ggaaatataataactttgatt 174  Q
    || |||| | || ||||||||||| |||||||||    
T  43556211 agaagat-attacggaaatataattactttgatt 43556179  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 17365436 - 17365379
Alignment:
Q  112 gaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactt 169  Q
    ||||||||||| || ||||||||||||||||| |||||   |||||||||||| ||||    
T  17365436 gaatttccttgaatcaatctcactatgttgagaagatcttaaggaaatataattactt 17365379  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 4436257 - 4436328
Alignment:
Q  71 taatgtaatttttggtattaaaattactaggtcagaaaagagaatttccttggattaatctcactatgttga 142  Q
    |||||| ||| | ||||| |||||||| ||||||||||||| | ||||||| ||| ||||||||||||||||    
T  4436257 taatgtcattgtgggtatgaaaattaccaggtcagaaaagaaattttccttagatcaatctcactatgttga 4436328  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 24944465 - 24944504
Alignment:
Q  191 accatatgatccaagtataaaactattcaagaacactggt 230  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  24944465 accatatgatacaagtataaaaatattcaagaacactggt 24944504  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 15235343 - 15235291
Alignment:
Q  112 gaatttccttggattaatctcactatgttgaggagatcactaggaaatataat 164  Q
    ||||||| |||||| ||||||||||||||||| |||||   ||||||||||||    
T  15235343 gaatttctttggatcaatctcactatgttgagaagatcttaaggaaatataat 15235291  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 17286082 - 17286182
Alignment:
Q  45 aactttgatatgaaagacctcg---aagttaatgtaatttttggtattaaaattactaggtcagaaaagagaatttccttggattaatctcactatgttg 141  Q
    |||||||||||||||||||| |   ||| | |||||||| ||| ||| || |||||||| ||||| ||| |||| ||||||||| | |||||||||||||    
T  17286082 aactttgatatgaaagacctaggagaagctgatgtaattcttgatatcaagattactagatcagataagggaatatccttggatcagtctcactatgttg 17286181  T
Q  142 a 142  Q
    |    
T  17286182 a 17286182  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 10489926 - 10489794
Alignment:
Q  45 aactttgatatgaaagacct---cgaagttaatgtaatttttggtattaaaattactaggtcagaaaagagaatttccttggattaatctcactatgttg 141  Q
    ||||||||||||||||||||    |||| | |||||||| |||| || || |||||||| ||| | ||  |||| ||||||||| |||||||||| ||||    
T  10489926 aactttgatatgaaagacctaggagaagctgatgtaattcttggcataaagattactagatcaaataaaggaatatccttggatcaatctcactacgttg 10489827  T
Q  142 aggagatcactaggaaatataataactttgatt 174  Q
    || |||||    ||||||||||| | |||||||    
T  10489826 agaagatcttacggaaatataattattttgatt 10489794  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 25687215 - 25687366
Alignment:
Q  74 tgtaatttttggtattaaaattactaggtcagaaaagagaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactttgat 173  Q
    ||||||| |||| || || |||||||  ||| ||||| |||||||||||||| ||||||||||| ||||| ||||    |||||||| ||| ||||| ||    
T  25687215 tgtaattcttggcatcaagattactatatcaaaaaag-gaatttccttggatcaatctcactatattgagaagattttaaggaaataaaattactttaat 25687313  T
Q  174 tacaaacttatttgcataccatatgatccaagtataaaactattcaagaacac 226  Q
    |  |||| ||   ||| ||| |||||||||| | ||||||| |||||||||||    
T  25687314 tgtaaacctacaagcacaccttatgatccaaatgtaaaactcttcaagaacac 25687366  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 17506791 - 17506729
Alignment:
Q  112 gaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactttgatt 174  Q
    ||||||||||| || ||||||||||||||||| |||||   |||||||||||| |||| ||||    
T  17506791 gaatttccttgaatcaatctcactatgttgagaagatcttaaggaaatataattacttcgatt 17506729  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 17548790 - 17548842
Alignment:
Q  112 gaatttccttggattaatctcactatgttgaggagatcactaggaaatataat 164  Q
    ||||||| |||||| ||||||||||||||||| |||||   ||||||||||||    
T  17548790 gaatttctttggatcaatctcactatgttgagaagatcttaaggaaatataat 17548842  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 13289034 - 13289134
Alignment:
Q  65 cgaagttaatgtaatttttggtattaaaattactaggtcagaaaagagaa-tttccttggattaatctcactatgttgaggagatcactaggaaatataa 163  Q
    ||||||| | |||||| ||||||| || |||||||| ||| ||||||||| |||  |||||| |||||||||||| |||| |||||   |||||||||||    
T  13289034 cgaagttgaagtaattcttggtatcaagattactagatcacaaaagagaattttatttggatcaatctcactatgctgagaagatcttaaggaaatataa 13289133  T
Q  164 t 164  Q
    |    
T  13289134 t 13289134  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 32081465 - 32081423
Alignment:
Q  107 aaagagaatttccttggattaatctcactatgttgaggagatc 149  Q
    |||||||||||| |||||| ||||||||||||||||| |||||    
T  32081465 aaagagaatttctttggatcaatctcactatgttgagaagatc 32081423  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 54993311 - 54993249
Alignment:
Q  112 gaatttccttggattaatctcactatgttgaggagatcactaggaaatataataactttgatt 174  Q
    ||||||||||| || ||||||||||||||||| |||||   |||||||||||| |||| ||||    
T  54993311 gaatttccttgaatcaatctcactatgttgagaagatcttaaggaaatataattacttcgatt 54993249  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 3822 - 3700
Alignment:
Q  45 aactttgatatgaaagacctcg---aagttaatgtaatttttggtattaaaattactaggtcagaaaagagaatttccttggattaatctcactatgttg 141  Q
    |||||||||||||||||||| |   ||| | |||||||| |||| || || |||||||  ||||| ||  |||| ||||| ||| |||||||||| ||||    
T  3822 aactttgatatgaaagacctaggagaagcttatgtaattcttggcataaagattactaaatcagataaaggaatatccttagatcaatctcactacgttg 3723  T
Q  142 aggagatcactaggaaatataat 164  Q
    || |||||   ||||||||||||    
T  3722 agaagatcttaaggaaatataat 3700  T

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