View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_low_3 (Length: 533)
Name: NF7591_low_3
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 42798906 - 42799407
Alignment:
| Q |
19 |
caactgcgaatcacaatttaaaacctctgacatacctataatcatgatagatttctggagcagttagcaagaattgaacatctcgcaagcttatattacc |
118 |
Q |
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| T |
42798906 |
caactgcgaatcacaatttaaaacctctgacatacctataatcatgatagatttctggagcagttagcaagaattgaacatctcgcaagcttatattacc |
42799005 |
T |
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| Q |
119 |
aactgccgtggtgccacctcttttgattacaggcacccctccaaccctctttttcctcatctctttaaatgcttgaaggactggttcatcctcataaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799006 |
aactgccgtggtgccacctcttttgattacaggcacccctccaaccctctttttcctcatctctttaaatgcttgaaggactggttcatcctcataaacc |
42799105 |
T |
|
| Q |
219 |
tgaaaagaatgaaacgatccattgtcaagttcatcaagatcgacaagcttgctttacttgaaaggggaaatgaaataactattttgaagcattttccata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799106 |
tgaaaagaatgaaacgatccattgtcaagttcatcaagatcgacaagtttactttacttgaaaggggaaatgaaataactattttgaagcattttccata |
42799205 |
T |
|
| Q |
319 |
tatgcacacacatttaagaaatgcaagatagcattttactctgtatgcactagagttatgcagaattcatacttgacaaggttcaatgcaatgagagctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799206 |
tatgcacacacatttaagaaatgcaagatagcattttactctgtatgcactagagttatgcagaattcatacttgacaaggttcaatgcaatgagagctt |
42799305 |
T |
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| Q |
419 |
atatgatatagtacacaccttgatgatctgttttggtgtcacaaggggaagaccaacatcagatagttccttggttccccaactttcgaaccattgatgt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42799306 |
atatgatatagtacacaccttgatgatctgttttggtgtcacaaggggaagaccaacatcagatagttccttggttccccaactttcgaaccattgaagt |
42799405 |
T |
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| Q |
519 |
cc |
520 |
Q |
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| T |
42799406 |
cc |
42799407 |
T |
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