View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7591_low_6 (Length: 486)
Name: NF7591_low_6
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 29570011 - 29569560
Alignment:
| Q |
18 |
aactagaacgagcaaatatgcatacaaggttagatatatagtgaaaaatcaag---tccaaaagatgtacttaaacattatgcttgattattcaattcaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29570011 |
aactagaacgagcaaatatgcatacaaggttagatatatagtgaaaaatcaagcagtccaaaagatgtacttaaacattatgcttgattattcaattcaa |
29569912 |
T |
|
| Q |
115 |
cagtcaaatgaaaataacaacgacgatttaaaatgtcaaaacatccaacaacggataactcaacgcatccaatgactaaatgacaaacaagtaccataag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569911 |
cagtcaaatgaaaataacaacgacgatttaaaatgtcaaaacatccaacaacggataactcaacgcatccaatgactaaatgacaaacaagtaccataag |
29569812 |
T |
|
| Q |
215 |
aaaagggcagaaaggcaaactttattttacataggaacacaaaaaccataaaagacaaccacattaagtaaaagaaacagaatcagaagttttgatgaat |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569811 |
aaaaggccagaaaggcaaactttattttacataggaacacaaaaaccataaaagacaaccacattaagtaaaagaaacagaatcagaagttttgatgaat |
29569712 |
T |
|
| Q |
315 |
ttcgggacgaacttctggatgaacttctctttccagcattgcagagtcgaaacggatgaaccgcagtcagaagtctttatgaacttctggaaggcaacac |
414 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569711 |
ttcaggacgaacttctggataaacttctctttccagcattgcagagtcgaaaaggatgaaccacagtcagaagtctttatgaacttctggaaggcaacac |
29569612 |
T |
|
| Q |
415 |
agccacctctaccaagttcctggtaacacttctcttcgcggcagtatccctt |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569611 |
agccacctctaccaagttcctggtaacacttctcttcgcggcagtatccctt |
29569560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University