View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7591_low_9 (Length: 324)
Name: NF7591_low_9
Description: NF7591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7591_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4349845 - 4349627
Alignment:
| Q |
1 |
ccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttg |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349845 |
ccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttg |
4349746 |
T |
|
| Q |
101 |
ccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349745 |
ccgcggtgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactc |
4349646 |
T |
|
| Q |
201 |
tcttggttattattggtac |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
4349645 |
tcttggttattattggtac |
4349627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4359039 - 4359257
Alignment:
| Q |
1 |
ccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttg |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359039 |
ccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttg |
4359138 |
T |
|
| Q |
101 |
ccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4359139 |
ccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaggccacacgtatcatactccatactc |
4359238 |
T |
|
| Q |
201 |
tcttggttattattggtac |
219 |
Q |
| |
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|||| || ||||||||||| |
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| T |
4359239 |
tcttagtaattattggtac |
4359257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4353231 - 4353014
Alignment:
| Q |
1 |
ccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4353231 |
ccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagctt- |
4353133 |
T |
|
| Q |
101 |
ccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactc |
200 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353132 |
ctacggcgtttgaccatcatgttgaggtccatcattagttttccctttgatataccttttcttaacatgaacaaagccacacgtatcatactccatactc |
4353033 |
T |
|
| Q |
201 |
tcttggttattattggtac |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
4353032 |
tcttggttattattggtac |
4353014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 43475430 - 43475611
Alignment:
| Q |
29 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
122 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| ||||| || |||| |||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
|
| Q |
123 |
tgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctctt |
204 |
Q |
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| ||| ||||||||||||| |||||||| || |||||||| |||||||| || |||||||||| ||||||||| ||| |||| |
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| T |
43475530 |
ttaggcccatcattagtttgccctttgacataccttttctcaacatgaagaaggccacacgtaccatactccacactttctt |
43475611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 43486106 - 43486230
Alignment:
| Q |
80 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagcca |
179 |
Q |
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|||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||| || || | |
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| T |
43486106 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggcta |
43486205 |
T |
|
| Q |
180 |
cacgtatcatactccatactctctt |
204 |
Q |
| |
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|||||| ||||||||| |||||||| |
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| T |
43486206 |
cacgtaccatactccacactctctt |
43486230 |
T |
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