View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7593_high_2 (Length: 401)
Name: NF7593_high_2
Description: NF7593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7593_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 9679703 - 9680096
Alignment:
| Q |
1 |
tacttcatattaccgttctctgaatatttttataaccgttgcaactttttcttaccgttgcacatatctctgaagattttatttaccattataattgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9679703 |
tacttcatattaccgttctctgaatatttttataaccgttgcaactttttcttaccgttgcacatatctctgaagattttatttaccattataattgtta |
9679802 |
T |
|
| Q |
101 |
ccaacacactttttcttctttagtcnnnnnnncacactttttcttctaaacatttcatttgccaatgaaccccaaccacaataattcttgatccaactac |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9679803 |
ccaacacactttttcttctttagtcaaaaaaacacactttttcatctaaacatttcatttgccaatgaaccccaaccacaataattcttggtccaactac |
9679902 |
T |
|
| Q |
201 |
ttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaatgcatccaataacccaaactcacatcataaaccaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9679903 |
ttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaatgcatccaataacccaaactcacatcataaaccaaatt |
9680002 |
T |
|
| Q |
301 |
ttcaaaatcatacttttatcccaaatccacacattggaaattatccatatcatacaccaccttatccataccactatcaacatttttcatctca |
394 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
9680003 |
ttcaaaatcatatttttatcccaaatccacacattggaaattatccatatcatacaccacgttatccataccactatcaacattttttatctca |
9680096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 9679668 - 9679702
Alignment:
| Q |
71 |
tgaagattttatttaccattataattgttaccaac |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9679668 |
tgaagatattatttaccattataattgttaccaac |
9679702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 13124040 - 13123992
Alignment:
| Q |
138 |
tttttcttctaaacatttcatttgccaatgaaccccaaccacaataatt |
186 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |||||||| |||||||||| |
|
|
| T |
13124040 |
tttttcttctacacatttcacttgtcaatcaaccccaaacacaataatt |
13123992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 46822232 - 46822625
Alignment:
| Q |
1 |
tacttcatattaccgttctctgaatatttttataaccgttgcaactttttcttaccgttgcacatatctctgaagattttatttaccattataattgtta |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46822232 |
tacttcatattaccgttctttgaatatttttataaccgttgcaactttttcttaccgttgcacatatctctgaagattttatttaccattataattgtta |
46822331 |
T |
|
| Q |
101 |
ccaacacactttttcttctttagtcnnnnnnncacactttttcttctaaacatttcatttgccaatgaaccccaaccacaataattcttgatccaactac |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46822332 |
ccaacacactttttcttctttagtcaaaaaaacacactttttcatctaaacatttcatttgccaatgaaccccaaccacaataattcttggtccaactac |
46822431 |
T |
|
| Q |
201 |
ttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaatgcatccaataacccaaactcacatcataaaccaaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46822432 |
ttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaatgcatccaataacccaaactcacatcataaatcaaatt |
46822531 |
T |
|
| Q |
301 |
ttcaaaatcatacttttatcccaaatccacacattggaaattatccatatcatacaccaccttatccataccactatcaacatttttcatctca |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46822532 |
ttcaaaatcatacttttatcccaaatccacacattggaaattatccatatcatacaccaccttattcataccactatcaacatttttcatctca |
46822625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 2555732 - 2555782
Alignment:
| Q |
138 |
tttttcttctaaacatttcatttgccaatgaaccccaaccacaataattct |
188 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2555732 |
tttttcttcaacacatttcatttgttaatgaaccccaaccacaataattct |
2555782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 46822197 - 46822231
Alignment:
| Q |
71 |
tgaagattttatttaccattataattgttaccaac |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46822197 |
tgaagatattatttaccattataattgttaccaac |
46822231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 138 - 394
Target Start/End: Complemental strand, 19698375 - 19698119
Alignment:
| Q |
138 |
tttttcttctaaacatttcatttgccaatgaaccccaaccacaataattcttgatccaactacttgcaaaatggtggcattcctccatgcatccaaaatc |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19698375 |
tttttcttctacacatttcatttgccaatgaaccccaaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatc |
19698276 |
T |
|
| Q |
238 |
aacaaaatgtctcctactttgaaaatgcatccaataacccaaactcacatcataaaccaaattttcaaaatcatacttttatcccaaatccacacattgg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
19698275 |
aacaaaatgtctcctactttgaaaatgcatccaataacccaaacccacatcctaacctaaattttcaaaatcatgcttttatcccaaacccacacattgg |
19698176 |
T |
|
| Q |
338 |
aaattatccatatcatacaccaccttatccataccactatcaacatttttcatctca |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19698175 |
aaattatccatatcatacaccaccttatccatatcactatcaacatttttcatctca |
19698119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 138 - 394
Target Start/End: Complemental strand, 32603954 - 32603698
Alignment:
| Q |
138 |
tttttcttctaaacatttcatttgccaatgaaccccaaccacaataattcttgatccaactacttgcaaaatggtggcattcctccatgcatccaaaatc |
237 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32603954 |
tttttcttctacacatttcatttgccaatgaaccccgaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatc |
32603855 |
T |
|
| Q |
238 |
aacaaaatgtctcctactttgaaaatgcatccaataacccaaactcacatcataaaccaaattttcaaaatcatacttttatcccaaatccacacattgg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
32603854 |
aacaaaatgtctcctactttgaaaatgcatccaataacccaaacccacatcctaacctaaattttcaaaatcatgcttttatcccaaacccacacattgg |
32603755 |
T |
|
| Q |
338 |
aaattatccatatcatacaccaccttatccataccactatcaacatttttcatctca |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
32603754 |
aaattatccatatcatacaccaccttacccatatcactatcaacatttttcatctca |
32603698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 49169358 - 49169411
Alignment:
| Q |
139 |
ttttcttctaaacatttcatttgccaatgaaccccaaccacaataattcttgat |
192 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
49169358 |
ttttcttctaaccattttatttgccgatgaaccccaaccaccataattcttgat |
49169411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 23563139 - 23563069
Alignment:
| Q |
324 |
aatccacacattggaaattatccatatcatacaccaccttatccataccactatcaacatttttcatctca |
394 |
Q |
| |
|
||||||| | |||||||||| ||||||||||| ||||||||| ||| || | |||||| ||||||||||| |
|
|
| T |
23563139 |
aatccaccctttggaaattacccatatcatacttcaccttatcaatatcaatctcaacaattttcatctca |
23563069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 138 - 394
Target Start/End: Complemental strand, 19793359 - 19793101
Alignment:
| Q |
138 |
tttttcttctaaacatttcatttgccaatgaaccccaaccacaataattcttgatccaactacttgcaaaatggtggcattcctccatgcatccaaaatc |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19793359 |
tttttcttctacacatttcatttgccaatgaaccccaaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatc |
19793260 |
T |
|
| Q |
238 |
aacaaaatgtctcctactttgaaaatgcatccaataacccaaactcacatcataaaccaaattttcaaaatcatacttttatcccaaatccacacattgg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
19793259 |
aacaaaatgtctcctactttgaaaatgcatccaataacccaaacccacatcctaacctaaattttcaaaatcatgcttttatcccaaacccacacattgg |
19793160 |
T |
|
| Q |
338 |
aaattatccatatcatacaccaccttatccatacca--ctatcaacatttttcatctca |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
19793159 |
aaattatccatatcatacaccaccttacccatatcactctatcaacatttttcatctca |
19793101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 1885178 - 1885207
Alignment:
| Q |
76 |
attttatttaccattataattgttaccaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1885178 |
attttatttaccattataattgttaccaac |
1885207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 20175353 - 20175307
Alignment:
| Q |
299 |
ttttcaaaatcatacttttatcccaaatccacacattggaaattatc |
345 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20175353 |
ttttcaaaatcatgcttttatcccaaatccacacattggaaattatc |
20175307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 45195323 - 45195383
Alignment:
| Q |
136 |
actttttcttctaaacatttcatttgccaatgaaccccaaccacaataattcttgatccaa |
196 |
Q |
| |
|
|||||||||| || |||||| |||| |||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
45195323 |
actttttcttttacacattttatttaccaatgaaccccaaccacgataatttttggtccaa |
45195383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 9217391 - 9217355
Alignment:
| Q |
236 |
tcaacaaaatgtctcctactttgaaaatgcatccaat |
272 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
9217391 |
tcaacaaaatgtctcatcctttgaaaatgcatccaat |
9217355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University