View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7593_low_1 (Length: 1274)

Name: NF7593_low_1
Description: NF7593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7593_low_1
NF7593_low_1
[»] chr7 (5 HSPs)
chr7 (1-1266)||(32001713-32002978)
chr7 (372-485)||(42713578-42713689)
chr7 (449-487)||(46976970-46977008)
chr7 (453-488)||(41437124-41437159)
chr7 (453-487)||(33084985-33085019)
[»] chr4 (14 HSPs)
chr4 (369-487)||(29728744-29728862)
chr4 (369-439)||(25209789-25209858)
chr4 (369-431)||(28485771-28485832)
chr4 (448-486)||(38450695-38450733)
chr4 (442-477)||(38020378-38020413)
chr4 (369-404)||(49437752-49437787)
chr4 (442-484)||(2097082-2097124)
chr4 (375-405)||(20863763-20863793)
chr4 (442-487)||(8456800-8456845)
chr4 (372-405)||(10184754-10184787)
chr4 (369-402)||(23149866-23149899)
chr4 (442-487)||(30979818-30979863)
chr4 (381-430)||(35437736-35437785)
chr4 (375-404)||(47774069-47774098)
[»] chr2 (10 HSPs)
chr2 (369-485)||(16452163-16452277)
chr2 (369-477)||(14195140-14195244)
chr2 (369-477)||(10843096-10843205)
chr2 (369-432)||(26849188-26849247)
chr2 (447-487)||(10429907-10429947)
chr2 (382-432)||(8452537-8452586)
chr2 (453-487)||(26849276-26849310)
chr2 (453-487)||(36959382-36959416)
chr2 (375-474)||(2579024-2579120)
chr2 (426-487)||(32103573-32103634)
[»] chr8 (9 HSPs)
chr8 (369-485)||(26413398-26413513)
chr8 (369-485)||(30005693-30005806)
chr8 (369-432)||(32535467-32535528)
chr8 (369-404)||(39162257-39162292)
chr8 (384-439)||(42476976-42477030)
chr8 (369-405)||(20692885-20692921)
chr8 (369-404)||(5135252-5135287)
chr8 (369-404)||(6802063-6802098)
chr8 (448-486)||(36665309-36665347)
[»] chr3 (9 HSPs)
chr3 (375-487)||(223064-223177)
chr3 (369-434)||(54258426-54258487)
chr3 (369-431)||(34881077-34881135)
chr3 (369-431)||(34881352-34881410)
chr3 (375-412)||(53506222-53506259)
chr3 (369-434)||(10448010-10448071)
chr3 (376-483)||(35282513-35282620)
chr3 (442-487)||(28590411-28590456)
chr3 (375-404)||(35418065-35418094)
[»] chr1 (11 HSPs)
chr1 (389-472)||(36343072-36343153)
chr1 (393-487)||(11098944-11099040)
chr1 (379-432)||(37379294-37379345)
chr1 (382-434)||(3949977-3950030)
chr1 (369-405)||(9922205-9922241)
chr1 (374-410)||(15873796-15873832)
chr1 (369-432)||(16469221-16469285)
chr1 (369-404)||(40905823-40905858)
chr1 (370-404)||(19612233-19612267)
chr1 (449-487)||(43183769-43183807)
chr1 (375-412)||(45806172-45806209)
[»] chr5 (4 HSPs)
chr5 (374-411)||(37993615-37993652)
chr5 (442-487)||(6296848-6296893)
chr5 (375-431)||(10301392-10301446)
chr5 (442-483)||(10635366-10635407)
[»] chr6 (1 HSPs)
chr6 (369-402)||(988922-988955)


Alignment Details
Target: chr7 (Bit Score: 1106; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 1106; E-Value: 0
Query Start/End: Original strand, 1 - 1266
Target Start/End: Original strand, 32001713 - 32002978
Alignment:
Q  1 aggttgcgcccaacaaaagcttacgtagccatcaacaagtttctgaaggtcaagctgcacatttccaagcatccccaaaactttacctgcatacagttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001713 aggttgcgcccaacaaaagcttacgtagccatcaacaagtttctgaaggtcaagctgcacatttccaagcatccccaaaactttacctgcatacagttca 32001812  T
Q  101 taacaactgtagcaacaactaaacatgatttaaatcaactagcataaaagctaggtaatttagatatggaagtgacgaaaaatttacccacttaccactc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32001813 taacaactgtagcaacaactaaacatgatttaaatcaactagcataaaagctaggtaatttagatatggaagtgacgaaaaatttacccactcaccactc 32001912  T
Q  201 tcttcatcatcatttaaggcagttttctccaatagacaagtacccatttcttgcaatgactccgaaaattctggaatatgtatcacaacaaagatacctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001913 tcttcatcatcatttaaggcagttttctccaatagacaagtacccatttcttgcaatgactccgaaaattctggaatatgtatcacaacaaagatacctt 32002012  T
Q  301 aagagactttaatttctcaaggcaataactgatcagggnnnnnnncgcatgaaaaatacannnnnnnnaatggcaaatgttagtatgttaattgttatgt 400  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||        ||||||||||||||||||||||||||||||||    
T  32002013 aagagactttaatttctcaaggcaataactgatcaggaaaaaaaacgcatgaaaaatacattttttttaatggcaaatgttagtatgttaattgttatgt 32002112  T
Q  401 tagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaaccagttgagctaaccaaccccctnnnnnnnnnnnn 500  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                 
T  32002113 tagttctttttctccttgccaggacttaaacccttgaccgccaacaccttaacccttagctcaaaccagttgagctaaccaacccccccccacacacaca 32002212  T
Q  501 nntgaaaaatactattaactacattacataaagatccagtttagataaactattcaagtacttccagaaaaataaatattaaaataattatgcaataaca 600  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002213 catgaaaaatactattaactacattacataaagatccagtttagataaactattcaagtacttccagaaaaataaatattaaaataattatgcaataaca 32002312  T
Q  601 acaagtattttaaacaacagcttcccatataagttgaaattagattctgcatttcaatattacagaagctctcatttaaagtgaggaggcaggggcacgg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002313 acaagtattttaaacaacagcttcccatataagttgaaattagattctgcatttcaatattacagaagctctcatttaaagtgaggaggcaggggcacgg 32002412  T
Q  701 ctgaagaggtcacggatcttgaaagagagaggagtgatatcacaggctacagagacgtggcaaagcttagaggagagctcaaaattgggaaaatatacat 800  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32002413 cttaagaggtcacggatcttgaaagagagaggagtgatatcacaggctacagagacgtggcaaagcttagaggagtgctcaaaattgggaaaatatacat 32002512  T
Q  801 aatgggaaagctaaagtttatcccaaccaagtcccaaaatccagcccaaaacacctcttcgtcaagacactcaaactcagtaatccacaatctcacaagc 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002513 aatgggaaagctaaagtttatcccaaccaagtcccaaaatccagcccaaaacacctcttcgtcaagacactcaaactcagtaatccacaatctcacaagc 32002612  T
Q  901 ttgatcagcattttcatcatgggctgttttccaaatatgtaatggacagaaatgctgaactttgcccataatgcagaagaccatgctgatcatagactac 1000  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32002613 ttgatcagcattttcatcatgggctgttttccaaatatgtaatggacagaaatgctgaactttgcccgtaatgcagaagaccatgctgatcatagactac 32002712  T
Q  1001 ggcaattggaaatgtagatatatatcttatattgttggagacattatatttagtgttaaatgcaaaagtgctaaatctcttgagggatagcctttccctc 1100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002713 ggcaattggaaatgtaaatatatatcttatattgttggagacattatatttagtgttaaatgcaaaagtgctaaatctcttgagggatagcctttccctc 32002812  T
Q  1101 cattgtggtcttacacagctcgagggatcagagtctctgcactaaagcacagaggatacccgcctcatactaacaaaagnnnnnnnnnnntcaattgcag 1200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||           ||||||||||    
T  32002813 cattgtggtcttacacagctcgagggatcagagtctctgcactaaagcacagaggatacccgcttcatactaacaaaagaaaaaaaaaaatcaattgcag 32002912  T
Q  1201 acacattccaaacaaccgtttagtaagaaacaaaaaattgttgctaccatatggacatctgtttgg 1266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002913 acacattccaaacaaccgtttagtaagaaacaaaaaattgttgctaccatatggacatctgtttgg 32002978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 372 - 485
Target Start/End: Complemental strand, 42713689 - 42713578
Alignment:
Q  372 ggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaaccagtt 471  Q
    |||||||||||||||||| |||| ||||||||||  |||||||||||||| ||||| |||||| ||||   ||| | ||||||||||||||||| |||||    
T  42713689 ggcaaatgttagtatgttgattgatatgttagtt--ttttctccttgccaagacttaaaccctggacctctaactcgttaacccttagctcaaatcagtt 42713592  T
Q  472 gagctaaccaaccc 485  Q
    |||||  |||||||    
T  42713591 gagctgcccaaccc 42713578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Original strand, 46976970 - 46977008
Alignment:
Q  449 ttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  46976970 ttaacccttagctcaaaccagttgagctacccaaccccc 46977008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 453 - 488
Target Start/End: Complemental strand, 41437159 - 41437124
Alignment:
Q  453 cccttagctcaaaccagttgagctaaccaaccccct 488  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41437159 cccttagctcaaaccagttgagctacccaaccccct 41437124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 453 - 487
Target Start/End: Original strand, 33084985 - 33085019
Alignment:
Q  453 cccttagctcaaaccagttgagctaaccaaccccc 487  Q
    ||||||||||||||||||||||||| |||||||||    
T  33084985 cccttagctcaaaccagttgagctacccaaccccc 33085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 4e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 369 - 487
Target Start/End: Original strand, 29728744 - 29728862
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaacca 468  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||||||   ||||||||||||||  | |  |||| ||||||||||||||||||||||    
T  29728744 aatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccctgaatctccaactccttaacccttagctcaaacca 29728843  T
Q  469 gttgagctaaccaaccccc 487  Q
    ||||||||| |||||||||    
T  29728844 gttgagctacccaaccccc 29728862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 25209858 - 25209789
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgacc 439  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||||||||||  ||||||||||| ||||    
T  25209858 aatggcaaatgttagtatgttaattattatgttag-tatttttctccttgccaaaacttgaaccctggacc 25209789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 28485832 - 28485771
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 431  Q
    |||| |||||||||||||||||||||||||||||  | |||||||||||| || |||||||||    
T  28485832 aatgacaaatgttagtatgttaattgttatgtta-atatttttctccttgtcatgacttgaac 28485771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 38450733 - 38450695
Alignment:
Q  448 cttaacccttagctcaaaccagttgagctaaccaacccc 486  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  38450733 cttaacccttagctcaaaccagttgagctacccaacccc 38450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 442 - 477
Target Start/End: Complemental strand, 38020413 - 38020378
Alignment:
Q  442 caacaccttaacccttagctcaaaccagttgagcta 477  Q
    |||| |||||||||||||||||||||||||||||||    
T  38020413 caactccttaacccttagctcaaaccagttgagcta 38020378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 49437787 - 49437752
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagt 404  Q
    |||||||||||||||||||||||||||| |||||||    
T  49437787 aatggcaaatgttagtatgttaattgttgtgttagt 49437752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 2097124 - 2097082
Alignment:
Q  442 caacaccttaacccttagctcaaaccagttgagctaaccaacc 484  Q
    |||| |||||||||||||||||||| |||||||||| ||||||    
T  2097124 caactccttaacccttagctcaaactagttgagctacccaacc 2097082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 405
Target Start/End: Complemental strand, 20863793 - 20863763
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagtt 405  Q
    |||||||||||||||||||||||||||||||    
T  20863793 aaatgttagtatgttaattgttatgttagtt 20863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 8456845 - 8456800
Alignment:
Q  442 caacaccttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    |||| ||||| ||||||||||||||||||||||||| |||| ||||    
T  8456845 caactccttatcccttagctcaaaccagttgagctacccaagcccc 8456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 10184754 - 10184787
Alignment:
Q  372 ggcaaatgttagtatgttaattgttatgttagtt 405  Q
    ||||||||||||||| ||||||||||||||||||    
T  10184754 ggcaaatgttagtatcttaattgttatgttagtt 10184787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 23149866 - 23149899
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgtta 402  Q
    |||| |||||||||||||||||||||||||||||    
T  23149866 aatgacaaatgttagtatgttaattgttatgtta 23149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 30979863 - 30979818
Alignment:
Q  442 caacaccttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    |||| ||||| ||||||||||||||||||||||||| |||| ||||    
T  30979863 caactccttatcccttagctcaaaccagttgagctacccaatcccc 30979818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 35437785 - 35437736
Alignment:
Q  381 tagtatgttaattgttatgttagttctttttctccttgccaggacttgaa 430  Q
    ||||||||||||||||||||||||  ||||| || |||| ||||||||||    
T  35437785 tagtatgttaattgttatgttagtattttttttcattgctaggacttgaa 35437736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 375 - 404
Target Start/End: Original strand, 47774069 - 47774098
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagt 404  Q
    ||||||||||||||||||||||||||||||    
T  47774069 aaatgttagtatgttaattgttatgttagt 47774098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 9e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 369 - 485
Target Start/End: Original strand, 16452163 - 16452277
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaacca 468  Q
    |||||||||||||||||||||| |||||| |||||||  |||||||||||| |||||||||||||  ||||  ||||   | ||||||||||||||||||    
T  16452163 aatggcaaatgttagtatgttatttgttacgttagtt--ttttctccttgctaggacttgaacccaagacctccaacttttgaacccttagctcaaacca 16452260  T
Q  469 gttgagctaaccaaccc 485  Q
    ||||||||| |||||||    
T  16452261 gttgagctacccaaccc 16452277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 369 - 477
Target Start/End: Original strand, 14195140 - 14195244
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaacca 468  Q
    ||||| ||||||||||||||||||| | ||||||||| |||||||||   |||| |||||||| || ||||  |||| ||||||||||||||||||||||    
T  14195140 aatggaaaatgttagtatgttaattttcatgttagtt-tttttctcc---ccagaacttgaacactggacctccaactccttaacccttagctcaaacca 14195235  T
Q  469 gttgagcta 477  Q
    |||||||||    
T  14195236 gttgagcta 14195244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 369 - 477
Target Start/End: Complemental strand, 10843205 - 10843096
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttag-ttctttttctccttgccaggac-ttgaacccttgaccggcaacaccttaacccttagctcaaac 466  Q
    ||||||||||||||||  ||||||||||||| ||| || |||||||||||| |||||| | ||||||| ||||  || | ||||  ||||||||||||||    
T  10843205 aatggcaaatgttagttggttaattgttatgctagtttttttttctccttgtcaggacatggaaccctggacctacacctcctt-ccccttagctcaaac 10843107  T
Q  467 cagttgagcta 477  Q
    |||||||||||    
T  10843106 cagttgagcta 10843096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 26849188 - 26849247
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 432  Q
    |||||||||| ||||||||||||||||||| ||||    ||||||||||||||| |||||||||    
T  26849188 aatggcaaatattagtatgttaattgttatattag----ttttctccttgccagcacttgaacc 26849247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 10429907 - 10429947
Alignment:
Q  447 ccttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  10429907 ccttatcccttagctcaaaccagttgagctacccaaccccc 10429947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 432
Target Start/End: Complemental strand, 8452586 - 8452537
Alignment:
Q  382 agtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 432  Q
    |||||||||||||||||||||| | ||||||||||| |||||| |||||||    
T  8452586 agtatgttaattgttatgttag-tatttttctccttaccaggatttgaacc 8452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 453 - 487
Target Start/End: Original strand, 26849276 - 26849310
Alignment:
Q  453 cccttagctcaaaccagttgagctaaccaaccccc 487  Q
    ||||||||||||||||||||||||| |||||||||    
T  26849276 cccttagctcaaaccagttgagctacccaaccccc 26849310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 453 - 487
Target Start/End: Complemental strand, 36959416 - 36959382
Alignment:
Q  453 cccttagctcaaaccagttgagctaaccaaccccc 487  Q
    ||||||||||||||||||||||||| |||||||||    
T  36959416 cccttagctcaaaccagttgagctacccaaccccc 36959382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 375 - 474
Target Start/End: Complemental strand, 2579120 - 2579024
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaaccagttgag 474  Q
    ||||||||||||| |||||||||||||||   |||||||| ||  || |||||||||||| ||||  || | | |||||||||| || |||| |||||||    
T  2579120 aaatgttagtatgctaattgttatgttag---tttttctctttatcaagacttgaaccctagacctccatctctttaacccttatcttaaacaagttgag 2579024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 426 - 487
Target Start/End: Complemental strand, 32103634 - 32103573
Alignment:
Q  426 ttgaacccttgaccggcaacaccttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    |||||||| |||||  |||| ||| | |||||||||||||| |||||||||| |||||||||    
T  32103634 ttgaacccatgacctccaactcctcatcccttagctcaaactagttgagctacccaaccccc 32103573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 369 - 485
Target Start/End: Original strand, 26413398 - 26413513
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaacca 468  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||| ||| |||   |||| | | ||| |||| |||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttagct-tttttctcctttccaagacttgaatcctggacatccaactcatgaactcttacctcaaacca 26413496  T
Q  469 gttgagctaaccaaccc 485  Q
    ||||||||| |||||||    
T  26413497 gttgagctacccaaccc 26413513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 369 - 485
Target Start/End: Complemental strand, 30005806 - 30005693
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaacca 468  Q
    ||||| |||||||| | |||||||||||||||||||  |||||||||||||||||||||| || || ||||  ||||  |||||||||| ||||||||||    
T  30005806 aatggtaaatgttactttgttaattgttatgttagt--tttttctccttgccaggacttggacgctggacc-ccaactacttaacccttggctcaaacca 30005710  T
Q  469 gttgagctaaccaaccc 485  Q
     || ||||| |||||||    
T  30005709 attaagctacccaaccc 30005693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 32535528 - 32535467
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 432  Q
    |||| ||||||||| ||||||||||||||||||||  ||||||||||||| || ||||||||||    
T  32535528 aatgacaaatgttaatatgttaattgttatgttag--ctttttctccttgtcaagacttgaacc 32535467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 39162292 - 39162257
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagt 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  39162292 aatggcaaatgttagtatgttaattgttatgttagt 39162257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 42476976 - 42477030
Alignment:
Q  384 tatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgacc 439  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||    
T  42476976 tatgttaattgttattttagta-tttttctccttgccaggacttgaaccctggacc 42477030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 20692921 - 20692885
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagtt 405  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20692921 aatggcaaatgttaatatgttaattgttatgttagtt 20692885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 5135287 - 5135252
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagt 404  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5135287 aatggcaaatgttagtatgttaattgtaatgttagt 5135252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 6802098 - 6802063
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagt 404  Q
    ||||||||| ||||||||||||||||||||||||||    
T  6802098 aatggcaaacgttagtatgttaattgttatgttagt 6802063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 36665309 - 36665347
Alignment:
Q  448 cttaacccttagctcaaaccagttgagctaaccaacccc 486  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  36665309 cttaacccttagctcaaaccagttaagctacccaacccc 36665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 223177 - 223064
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagttctttt-tctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaaccagttga 473  Q
    |||||||||||||||||||||| |||||||| |||| | ||||||  |||||||||| ||| | |   | ||  |||||| |||||||||||||||||||    
T  223177 aaatgttagtatgttaattgttgtgttagtttttttatttccttgtgaggacttgaatcctaggcttccgactacttaactcttagctcaaaccagttga 223078  T
Q  474 gctaaccaaccccc 487  Q
    |||| |||||||||    
T  223077 gctatccaaccccc 223064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 54258487 - 54258426
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccct 434  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||  |||||||||||||||    
T  54258487 aatggcaaatgttagtatgttaattgttatgttag----ttttctccttaacaggacttgaaccct 54258426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 34881135 - 34881077
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 431  Q
    |||| ||||||||| ||||||||||||| ||||||    ||||||||||||||||||||||||    
T  34881135 aatgacaaatgttaatatgttaattgttttgttag----ttttctccttgccaggacttgaac 34881077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 34881410 - 34881352
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 431  Q
    |||| ||||||||| ||||||||||||| ||||||    ||||||||||||||||||||||||    
T  34881410 aatgacaaatgttaatatgttaattgttttgttag----ttttctccttgccaggacttgaac 34881352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 53506259 - 53506222
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagttctttttc 412  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  53506259 aaatgttagtatgttaattgttatgttagttttttttc 53506222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 369 - 434
Target Start/End: Original strand, 10448010 - 10448071
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccct 434  Q
    ||||||||||| |||||||||||||||||| ||||||    || | ||||||||||||||||||||    
T  10448010 aatggcaaatgatagtatgttaattgttatattagtt----ttatacttgccaggacttgaaccct 10448071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 376 - 483
Target Start/End: Original strand, 35282513 - 35282620
Alignment:
Q  376 aatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaac-ccttagctcaaaccagttgag 474  Q
    ||||||||||| || ||||||||||||||  ||||||||  ||| ||||||||||  |||||||   ||| ||| ||| ||||||||||||||||||||     
T  35282513 aatgttagtatattcattgttatgttagta-tttttctctatgcaaggacttgaaaacttgacctttaactcctcaactccttagctcaaaccagttgaa 35282611  T
Q  475 ctaaccaac 483  Q
    ||| |||||    
T  35282612 ctacccaac 35282620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 442 - 487
Target Start/End: Original strand, 28590411 - 28590456
Alignment:
Q  442 caacaccttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    |||||||||  |||||||||||||||||||||| || |||||||||    
T  28590411 caacaccttgtcccttagctcaaaccagttgagttacccaaccccc 28590456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 375 - 404
Target Start/End: Original strand, 35418065 - 35418094
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagt 404  Q
    ||||||||||||||||||||||||||||||    
T  35418065 aaatgttagtatgttaattgttatgttagt 35418094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 389 - 472
Target Start/End: Complemental strand, 36343153 - 36343072
Alignment:
Q  389 taattgttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaaccagttg 472  Q
    |||||||||||| ||||  |||||||||||||||| |||||||||| ||||  |||| |||||||||| |||||||| ||||||    
T  36343153 taattgttatgtcagtt--ttttctccttgccagggcttgaaccctggaccttcaactccttaaccctgagctcaaatcagttg 36343072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 393 - 487
Target Start/End: Complemental strand, 11099040 - 11098944
Alignment:
Q  393 tgttatgttag-ttctttttct-ccttgccaggacttgaacccttgaccggcaacaccttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    ||||||||||| || ||||||| |||||||| |||||| ||||| |||   |||| ||||||||||||||||||||| | ||||||| |||||||||    
T  11099040 tgttatgttagcttttttttcttccttgccaagacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaaccccc 11098944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 37379294 - 37379345
Alignment:
Q  379 gttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 432  Q
    |||| ||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  37379294 gttattatgttaattgttatattagtt--ttttctccttgccaggacttgaacc 37379345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 3950030 - 3949977
Alignment:
Q  382 agtatgttaattgttatgttagt-tctttttctccttgccaggacttgaaccct 434  Q
    ||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||    
T  3950030 agtatgtcaattgttatgttagtgtttttttctccttgccaagacttgaaccct 3949977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 9922241 - 9922205
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagtt 405  Q
    |||| ||||||||||||||||||||||||||||||||    
T  9922241 aatgacaaatgttagtatgttaattgttatgttagtt 9922205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 15873832 - 15873796
Alignment:
Q  374 caaatgttagtatgttaattgttatgttagttctttt 410  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15873832 caaatgttagtatgttaattgttatgttagttttttt 15873796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 16469285 - 16469221
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttag-ttctttttctccttgccaggacttgaacc 432  Q
    |||| ||||| |||||| ||||||||||||||||| || |||||||| |||||| ||||||||||    
T  16469285 aatgacaaatattagtaggttaattgttatgttagtttttttttctcattgccaagacttgaacc 16469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 40905858 - 40905823
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgttagt 404  Q
    |||| |||||||||||||||||||||||||||||||    
T  40905858 aatgacaaatgttagtatgttaattgttatgttagt 40905823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 19612267 - 19612233
Alignment:
Q  370 atggcaaatgttagtatgttaattgttatgttagt 404  Q
    ||||||||||| |||||||||||||||||||||||    
T  19612267 atggcaaatgtcagtatgttaattgttatgttagt 19612233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 449 - 487
Target Start/End: Original strand, 43183769 - 43183807
Alignment:
Q  449 ttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  43183769 ttaacctttagctcaaaccagttgagctacccaaccccc 43183807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 45806209 - 45806172
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagttctttttc 412  Q
    |||||||||||||||||||||||||||| || ||||||    
T  45806209 aaatgttagtatgttaattgttatgttaattatttttc 45806172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 37993652 - 37993615
Alignment:
Q  374 caaatgttagtatgttaattgttatgttagttcttttt 411  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37993652 caaatgttagtatgttaattgttatgttagtttttttt 37993615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 6296893 - 6296848
Alignment:
Q  442 caacaccttaacccttagctcaaaccagttgagctaaccaaccccc 487  Q
    |||| ||||| |||||||||||||||| |||||||| |||||||||    
T  6296893 caactccttatcccttagctcaaaccaattgagctacccaaccccc 6296848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 10301392 - 10301446
Alignment:
Q  375 aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 431  Q
    ||||||||||||||||||| |||||||||   |||||||||||| ||| ||||||||    
T  10301392 aaatgttagtatgttaattattatgttag--atttttctccttgtcagaacttgaac 10301446  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 10635366 - 10635407
Alignment:
Q  442 caacaccttaacccttagctcaaaccagttgagctaaccaac 483  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  10635366 caactccttatcccttagctcaaaccagttgagctacccaac 10635407  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 988922 - 988955
Alignment:
Q  369 aatggcaaatgttagtatgttaattgttatgtta 402  Q
    |||||||||||||||||| |||||||||||||||    
T  988922 aatggcaaatgttagtattttaattgttatgtta 988955  T

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