View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7593_low_2 (Length: 501)
Name: NF7593_low_2
Description: NF7593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7593_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 483
Target Start/End: Original strand, 43206880 - 43207354
Alignment:
| Q |
9 |
tcgtgttgaaggaaaagttgaggggtcatagtggggcaatactttgtttagtcaacgttgatgatttgttggtgagtgggtcagctgatctaacggtgag |
108 |
Q |
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| T |
43206880 |
tcgtgttgaaggaaaagttgaggggtcatagtggggcaatactttgtttagtcaacgttgatgatttgttggcgagtgggtcagctgatctaacggtgag |
43206979 |
T |
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| Q |
109 |
gatttggcagagggagaagggaggtagtagctattgttgtagaggagtgttggaaggacatgaaaaaccggtaaagtcgttggtggcaatttccggtgga |
208 |
Q |
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| T |
43206980 |
gatttggcagagggagaagggaggtagtagctattgttgtagaggagtgttggaaggacatgaaaaaccggtaaagtcgttggtggcaatttccggtgga |
43207079 |
T |
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| Q |
209 |
ggtgaagatgatgatgaggttgttacgttgtttagtggaagtcttgatggtgatattagagtttgggaagtgtttggtttggtttaaaacttaattgatt |
308 |
Q |
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| T |
43207080 |
ggtgaagatgatgatgaggttgttacgttgtttagtggaagtcttgatggtgatattagagtttgggaagtgtttggtttggtttaaaacttaattgatt |
43207179 |
T |
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| Q |
309 |
ctgcttaatgcaaaccatgtccactctacccgtttgaattttttaaacgtggtgttaattaattaactagataagttgaaattctgacactaacgtcgtg |
408 |
Q |
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| T |
43207180 |
ctgcttaatgcaaaccatgtccactctacccgtttgaattttttaaacttggtgttaattaattaaccagataagttgaaattctgacacttacgtcgtg |
43207279 |
T |
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| Q |
409 |
ggagtttacaaggaaaccggacgtgccaaacagagctgcagattcaagttaatggaggcttatatataacatatg |
483 |
Q |
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| T |
43207280 |
ggagtttacaaggaaaccggacgtgccaaacagagctgcagattcaagttaatgcaggcttatatataacatatg |
43207354 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 37303823 - 37303891
Alignment:
| Q |
47 |
atactttgtttagtcaacgttgatgatttgttggtgagtgggtcagctgatctaacggtgaggatttgg |
115 |
Q |
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| T |
37303823 |
atactttgtttgatcaacgtttctgatttgttgctgagtggttctgctgatcggacggttaggatttgg |
37303891 |
T |
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