View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7593_low_4 (Length: 339)

Name: NF7593_low_4
Description: NF7593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7593_low_4
NF7593_low_4
[»] chr4 (17 HSPs)
chr4 (15-324)||(50669370-50669679)
chr4 (68-242)||(37826510-37826681)
chr4 (114-248)||(48147279-48147410)
chr4 (203-312)||(48903255-48903364)
chr4 (275-315)||(45384625-45384665)
chr4 (274-315)||(45365946-45365987)
chr4 (278-310)||(7878045-7878077)
chr4 (114-165)||(48155989-48156040)
chr4 (98-165)||(48853131-48853198)
chr4 (278-312)||(48870857-48870891)
chr4 (278-312)||(48876161-48876195)
chr4 (278-312)||(48886543-48886577)
chr4 (274-307)||(50672800-50672833)
chr4 (280-308)||(7771696-7771724)
chr4 (280-308)||(7790381-7790409)
chr4 (274-310)||(37826716-37826752)
chr4 (117-165)||(45365783-45365831)
[»] chr5 (1 HSPs)
chr5 (92-313)||(42561874-42562092)
[»] chr8 (8 HSPs)
chr8 (88-165)||(12200789-12200866)
chr8 (88-165)||(12445217-12445294)
chr8 (278-310)||(4962249-4962281)
chr8 (98-165)||(4030332-4030399)
chr8 (273-310)||(12195623-12195660)
chr8 (273-310)||(12200641-12200678)
chr8 (273-310)||(12440051-12440088)
chr8 (273-310)||(12445069-12445106)
[»] chr3 (3 HSPs)
chr3 (196-315)||(11024148-11024264)
chr3 (278-314)||(47451630-47451666)
chr3 (263-316)||(11015200-11015253)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 50669679 - 50669370
Alignment:
Q  15 ctgtgtacatagccactttggatccaactgaattgttatagtaggagtggtagtctaagagttgtactttatcattattatatttcaccaatccagaacc 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669679 ctgtatacatagccactttggatccaactgaattgttatagtaggagtggtagtctaagagttgtactttatcattattatatttcaccaatccagaacc 50669580  T
Q  115 accatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgtagaataagagtcttagtccaagat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669579 accatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgtagaataagagtcttagtccaagat 50669480  T
Q  215 gaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattctccaaatacccacaaaccacaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669479 gaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattctccaaatacccacaaaccacaat 50669380  T
Q  315 ctgaagtttg 324  Q
    ||||||||||    
T  50669379 ctgaagtttg 50669370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 37826510 - 37826681
Alignment:
Q  68 tctaagagttgtactttatcattattatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaatt 167  Q
    |||||||||||| ||||||||||||   | ||||||||||||  |||||| |||| ||||||||| |||||| | |||||||| |||| |||| |||| |    
T  37826510 tctaagagttgtcctttatcattat---acttcaccaatccaagaccaccgtctgatccaataatatcaccactttttgtagaacatagagggtaaaaat 37826606  T
Q  168 taggaatgactgcatcaatctgtagaataagagtcttagtccaagatgaatgcaacttggaatctttcatcaccc 242  Q
    | |||||| |  |||||||| | | || |||||||||||||||||| |||||||  ||| | |||||||||||||    
T  37826607 tgggaatggcatcatcaatccgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 48147279 - 48147410
Alignment:
Q  114 caccatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgtagaataagagtcttagtccaaga 213  Q
    |||||| ||||||||||||||||||| | ||||| ||||||||||||||||| |  ||||||    |||||||    | | |||||||||||||||||||    
T  48147279 caccatttgttccaataatgtcaccactttttgtggagcatataggggaaaagtagggaatg---ccatcaatagacaaattaagagtcttagtccaaga 48147375  T
Q  214 tgaatgcaacttggaatctttcatcacccacattt 248  Q
     |||||||  ||| | |||||||||||||| ||||    
T  48147376 cgaatgcactttgtattctttcatcacccatattt 48147410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 48903364 - 48903255
Alignment:
Q  203 ttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattctccaaataccc 302  Q
    |||||||||||  ||||||  ||| | |||||||||||||| |||| |||||| |||| ||  ||||||| ||| || || |||||||||||||||||||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 48903265  T
Q  303 acaaaccaca 312  Q
    | ||| ||||    
T  48903264 ataaatcaca 48903255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 45384625 - 45384665
Alignment:
Q  275 caaagactgagaaattctccaaatacccacaaaccacaatc 315  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  45384625 caaaaactgagaaattctccaaatacccacaaaccacaatc 45384665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 45365946 - 45365987
Alignment:
Q  274 ccaaagactgagaaattctccaaatacccacaaaccacaatc 315  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  45365946 ccaaaaactgaaaaattctccaaatacccacaaaccacaatc 45365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 7878077 - 7878045
Alignment:
Q  278 agactgagaaattctccaaatacccacaaacca 310  Q
    |||||||||||||||||||||||||||||||||    
T  7878077 agactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 48155989 - 48156040
Alignment:
Q  114 caccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 165  Q
    |||| |||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  48155989 caccgtctgttccaacaatgtcaccattttttgtagagcatattgggtaaaa 48156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 48853198 - 48853131
Alignment:
Q  98 ttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 165  Q
    ||||||||||||  | ||||||| ||||||||||| |||||| |||||||| | ||||| ||||||||    
T  48853198 ttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaa 48853131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 48870891 - 48870857
Alignment:
Q  278 agactgagaaattctccaaatacccacaaaccaca 312  Q
    |||||||||||||| ||||||||||||||||||||    
T  48870891 agactgagaaattccccaaatacccacaaaccaca 48870857  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 48876195 - 48876161
Alignment:
Q  278 agactgagaaattctccaaatacccacaaaccaca 312  Q
    |||||||||||||| ||||||||||||||||||||    
T  48876195 agactgagaaattccccaaatacccacaaaccaca 48876161  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 48886577 - 48886543
Alignment:
Q  278 agactgagaaattctccaaatacccacaaaccaca 312  Q
    |||||||||||||| ||||||||||||||||||||    
T  48886577 agactgagaaattccccaaatacccacaaaccaca 48886543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 50672833 - 50672800
Alignment:
Q  274 ccaaagactgagaaattctccaaatacccacaaa 307  Q
    ||||| ||||||||||||||||||||||||||||    
T  50672833 ccaaaaactgagaaattctccaaatacccacaaa 50672800  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 7771724 - 7771696
Alignment:
Q  280 actgagaaattctccaaatacccacaaac 308  Q
    |||||||||||||||||||||||||||||    
T  7771724 actgagaaattctccaaatacccacaaac 7771696  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 7790409 - 7790381
Alignment:
Q  280 actgagaaattctccaaatacccacaaac 308  Q
    |||||||||||||||||||||||||||||    
T  7790409 actgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 37826716 - 37826752
Alignment:
Q  274 ccaaagactgagaaattctccaaatacccacaaacca 310  Q
    ||| ||||| |||||||||||||||||||||||||||    
T  37826716 ccatagactaagaaattctccaaatacccacaaacca 37826752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 45365783 - 45365831
Alignment:
Q  117 catctgttccaataatgtcaccattctttgtagagcatataggggaaaa 165  Q
    |||||||||||||||| |||||  | ||||||||||||| |||||||||    
T  45365783 catctgttccaataatatcaccgctttttgtagagcataaaggggaaaa 45365831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 42561874 - 42562092
Alignment:
Q  92 ttatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgta 191  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||| || ||| |||| |||| |  |||||| |  ||| |||  | |    
T  42561874 ttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaa 42561973  T
Q  192 gaataagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattc 291  Q
    ||| |||| |||||||||||||||||||||  ||| | |||||||||||||| || | ||     |||| ||||  |||| |||| |||||||||||| |    
T  42561974 gaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa---cattatcgtccctcaaaatccatagactgagaaatcc 42562070  T
Q  292 tccaaatacccacaaaccacaa 313  Q
    || ||||||||| |||||||||    
T  42562071 tctaaatacccaaaaaccacaa 42562092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 12200866 - 12200789
Alignment:
Q  88 attattatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 165  Q
    ||||||||| ||||||||||||  ||||| ||| ||||||||||| |||||| | ||||||||| |||||||||||||    
T  12200866 attattatacttcaccaatccatgaccactatcagttccaataatatcaccactttttgtagagtatataggggaaaa 12200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 12445294 - 12445217
Alignment:
Q  88 attattatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 165  Q
    ||||||||| ||||||||||||  ||||| ||| ||||||||||| |||||| | ||||||||| |||||||||||||    
T  12445294 attattatacttcaccaatccatgaccactatcagttccaataatatcaccactttttgtagagtatataggggaaaa 12445217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 4962249 - 4962281
Alignment:
Q  278 agactgagaaattctccaaatacccacaaacca 310  Q
    |||||||||||||||||||||||||||||||||    
T  4962249 agactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 4030332 - 4030399
Alignment:
Q  98 ttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 165  Q
    ||||||||| ||| |||||||| |||||||||||| |||||| |  |||||||||| || ||||||||    
T  4030332 ttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacattggggaaaa 4030399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 12195660 - 12195623
Alignment:
Q  273 tccaaagactgagaaattctccaaatacccacaaacca 310  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  12195660 tccatagactgagaaattttccaaatacccacaaacca 12195623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 12200678 - 12200641
Alignment:
Q  273 tccaaagactgagaaattctccaaatacccacaaacca 310  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  12200678 tccatagactaagaaattctccaaatacccacaaacca 12200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 12440088 - 12440051
Alignment:
Q  273 tccaaagactgagaaattctccaaatacccacaaacca 310  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  12440088 tccatagactgagaaattttccaaatacccacaaacca 12440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 12445106 - 12445069
Alignment:
Q  273 tccaaagactgagaaattctccaaatacccacaaacca 310  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  12445106 tccatagactaagaaattctccaaatacccacaaacca 12445069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 11024148 - 11024264
Alignment:
Q  196 aagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattctcca 295  Q
    |||||||||||||||||| |||||||  ||| | |||||||| ||||| |||| ||  ||||||    || ||| || ||| ||||||||||||||||||    
T  11024148 aagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa--ttgttacacccc-ccatagcccatagactgagaaattctcca 11024244  T
Q  296 aatacccacaaaccacaatc 315  Q
    |||| ||||||| |||||||    
T  11024245 aatatccacaaatcacaatc 11024264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 47451630 - 47451666
Alignment:
Q  278 agactgagaaattctccaaatacccacaaaccacaat 314  Q
    ||||| |||||||||||||||||||||||||||||||    
T  47451630 agactaagaaattctccaaatacccacaaaccacaat 47451666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 11015200 - 11015253
Alignment:
Q  263 tcctccaaagtccaaagactgagaaattctccaaatacccacaaaccacaatct 316  Q
    ||||||| || ||| ||||| |||||||||||||||| ||||||| ||||||||    
T  11015200 tcctccatagcccatagacttagaaattctccaaatatccacaaatcacaatct 11015253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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