View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7593_low_5 (Length: 288)
Name: NF7593_low_5
Description: NF7593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7593_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 34834947 - 34835210
Alignment:
| Q |
18 |
gttccatcttccaaaataattccacatgtaatagttttggtgatactctcatcaacaagactctcaaccactgtttgtggaagatcttcaacatcatgtt |
117 |
Q |
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| T |
34834947 |
gttccatcttccaaaataattccacatgtaatagttttggtgatactctcatcaacaagactctcaaccactgtttgtggaagatcttcaacatcatgtt |
34835046 |
T |
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| Q |
118 |
taatattttggtacctacaagcatttcctctttttgattctgattttgctgttcttattctcattcctttatgttcatgacacctaactcttttctcgac |
217 |
Q |
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| T |
34835047 |
taatattttggtacctacaagcatttcctctttttgattctgattttgctgttcttattctcattcctttatgttcatgacacctaactcttttctcgac |
34835146 |
T |
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| Q |
218 |
cggtgtctttgtacaaatagaaccatcatccaaaatcactccacaaattttatctttcttctca |
281 |
Q |
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| T |
34835147 |
cggcgtctttgtacaaatagaaccatcatccaaaatcactccacaaattttatctttcttctca |
34835210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 34820049 - 34820119
Alignment:
| Q |
176 |
tctcattcctttatgttcatgacacctaactcttttctcgaccggtgtctttgtacaaatagaaccatcat |
246 |
Q |
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| T |
34820049 |
tctcattcctttatgttcttggcagctaactcttttctcagctggtggctttgtacaaatactaccatcat |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 35336743 - 35336646
Alignment:
| Q |
172 |
ttattctcattcctttatgttcatgacacctaactcttttctcgaccggtgtctttgtacaaatagaaccatcatccaaaatcactccacaaatttta |
269 |
Q |
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| T |
35336743 |
ttattctcattcctttgtgttcaggacacctcactcttttttcaaccggtggccttttacaaatagaaccgtcggtcaacatcactccgcaaatttta |
35336646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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