View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7594_high_5 (Length: 250)
Name: NF7594_high_5
Description: NF7594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7594_high_5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 48040014 - 48040248
Alignment:
| Q |
16 |
atcaggctacgattgcaccaatttctacatcatgtgggaaatttatcataaaacacttcatataacggatacaaaatcagttcaaaccagctctaatcaa |
115 |
Q |
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| T |
48040014 |
atcaggctacgattgcaccaatttctacatcatgtgggaaatttatcataaaacacttcatataacggatacaaaatcagttcaaaccagctctaatcaa |
48040113 |
T |
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| Q |
116 |
tgatatttcactaaggtaacagttacggtgatttcaaaacaagaattgagcaaattaatcacgacatacttcatataacagttnnnnnnncagttcaaaa |
215 |
Q |
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| T |
48040114 |
tgatatttcactaaggtaacagttacggtgatttcaaaacaagaattaagcaaattaatcacgacatacttcatataacagtaaaaaaaacagttcaaaa |
48040213 |
T |
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| Q |
216 |
caactcatatcaatgattttccctaaaacgtaaca |
250 |
Q |
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| T |
48040214 |
caactcatatcaatgattttccctaaaacgtaaca |
48040248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 48031030 - 48031191
Alignment:
| Q |
89 |
aaatcagttcaaaccagctctaatcaatgatatttcactaaggtaacagttacggtgatttcaaaacaagaattgagcaaattaatcacgacatacttca |
188 |
Q |
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| T |
48031030 |
aaatcagttcaaaccagctctaatcaatgatatttcactaaggtaacagttacggtgatttcaaaacaacaattgagcaaattaatcacgacatacttca |
48031129 |
T |
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| Q |
189 |
tataacagttnnnnnnncagttcaaaacaactcatatcaatgattttccctaaaacgtaaca |
250 |
Q |
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| T |
48031130 |
tataacagtaaaaaaaacagttcaaaacaactcatatcaatgattttccctaaaacgtaaca |
48031191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 48030931 - 48030998
Alignment:
| Q |
28 |
ttgcaccaatttctacatcatgtggg-aaatttatcataaaacacttcatataacggatacaaaatca |
94 |
Q |
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| T |
48030931 |
ttgcaccaacttctacatcatttgagcaaatttatcataaaacacttcatatgacagttacaaaatca |
48030998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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