View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7594_low_1 (Length: 745)
Name: NF7594_low_1
Description: NF7594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7594_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 655; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 18 - 734
Target Start/End: Complemental strand, 9834739 - 9834007
Alignment:
| Q |
18 |
aatccaaacaaactaacatcgacctacaacagctgcaatgcaactacaattacaaattcccccctttctacaaggatgccacatcacaatcaaatatcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9834739 |
aatccaaacaaactaacatcgacctacaacagctgcaatgcaactacaattacaaatttccccctttctacaaggatgccacatcacaatcaaatatcta |
9834640 |
T |
|
| Q |
118 |
cccctccaaccttatttttcctttttataaatagttaaagtgattaaattgaatatggattttcaggctatacattgttagtgtaaataagttttatact |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834639 |
cccctccaaccttatttttcctttatataaatagttaaagtgattaaattgaatatggattttcaggctatacattgttagtgtaaataagttttatact |
9834540 |
T |
|
| Q |
218 |
gatatcaaatcaaaatcaactatttagtgacatcactctgtattttcgagta-----tatgacatgaaaaatggaagcttctcattggatgtcagtgtag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
9834539 |
gatatcaaatcaaaatcaactatttagtgacatcactctgtattttcgagtatatggtatgacatgaaaattggaagcttctcattggatgtcagtgtag |
9834440 |
T |
|
| Q |
313 |
aactgatttattctgacaatgcatggccattaatctcgttcaatatttatcaactccttccctttcataagttaatttgagggcatacatacattccaca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834439 |
aactgatttattctgacaatgcatggccattaatctcgttcaatatttatcaactccttccctttcataagttaatttgagggcatacatacattccaca |
9834340 |
T |
|
| Q |
413 |
ttccacagaaaagtacatattgaacctattattggaaccttcatctaatggtcaa-----------gtttacttcttgtgtttcatgtttccatttccac |
501 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9834339 |
ttccacagaaaagtacatatggaacctattattggaaccttcatctaatggtcaagttaagtgcccgtttacttcttgtgtttcatgtttccatttccac |
9834240 |
T |
|
| Q |
502 |
tgataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacat |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834239 |
tgataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacat |
9834140 |
T |
|
| Q |
602 |
tattttcattgtttccaagctttttgatcccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattagtgtc |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
9834139 |
tattttcattgtttccaagctttttgatcccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattaatgtc |
9834040 |
T |
|
| Q |
702 |
tcagattgtcagtcatgaagcaaactaattcat |
734 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9834039 |
tcagattgtcagtcatgaagcaaactaattcat |
9834007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 18 - 619
Target Start/End: Complemental strand, 9845615 - 9845003
Alignment:
| Q |
18 |
aatccaaacaaactaacatcgacctacaacagctgcaatgcaactacaattacaaattcccccctttctacaaggatgccacatcacaatcaaatatcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9845615 |
aatccaaacaaactaacatcgacctacaacagctgcaatgcaactacaattacaaattcccccctttctacaaggatgccacatcacaatcaaatatcta |
9845516 |
T |
|
| Q |
118 |
cccctccaaccttatttttcctttttataaatagttaaagtgattaaattgaatatggattttcaggctatacattgttagtgtaaataagttttatact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9845515 |
cccctccaaccttatttttcctttttataaatagttaaagtgattaaattgaatatggattttcaggctatacattgttagtgtaaataagttttatact |
9845416 |
T |
|
| Q |
218 |
gatatcaaatcaaaatcaactatttagtgacatcactctgtattttcgagtatatgacatgaaaaatggaagcttctcattggatgtcagtgtagaactg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9845415 |
gatatcaaatcaaaatcaactatttagtgacatcactctgtattttcgagtatatgacatgaaaaatggaagcttctcattggatgtcagtgtagaactg |
9845316 |
T |
|
| Q |
318 |
atttattctgacaatgcatggccattaatctcgttcaatatttatcaactccttccctttcataagttaatttgagggcatacatacattccacattcca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9845315 |
atttattctgacaatgcatggccattaatctcattcaatatttatcaactccttccctttcataagttaatttgagggcatacatacattccacattcca |
9845216 |
T |
|
| Q |
418 |
cagaaaagtacatattgaacctattattggaaccttcatctaatggtcaa-----------gtttacttcttgtgtttcatgtttccatttccactgata |
506 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9845215 |
cagaaaagtacatatggaacctattattggaaccttcatctaatggtcaagttaagtgcccgtttacttcttgtgtttcatgtttccatttccactgata |
9845116 |
T |
|
| Q |
507 |
aaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacattattt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9845115 |
aaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattcacaaactttcaaaacattattt |
9845016 |
T |
|
| Q |
607 |
tcattgtttccaa |
619 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9845015 |
tcattgtttccaa |
9845003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 630 - 734
Target Start/End: Complemental strand, 9844930 - 9844826
Alignment:
| Q |
630 |
cccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattagtgtctcagattgtcagtcatgaagcaaactaa |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9844930 |
cccctaagctttttgatccaaggtttggcatgcacgttacaagaccacttagttttattgccaattagtgtctcagattgtcagtcatgaagcaaactaa |
9844831 |
T |
|
| Q |
730 |
ttcat |
734 |
Q |
| |
|
||||| |
|
|
| T |
9844830 |
ttcat |
9844826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 568
Target Start/End: Complemental strand, 14335406 - 14335307
Alignment:
| Q |
468 |
gtttacttcttgtgtttcatgtttccatttccactgataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattg |
567 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| | | ||||||||||| |||||||||||||| ||| |||| |||||| |||| |||||||||||||||| |
|
|
| T |
14335406 |
gttttcttctcgtgttttatgtttccattttcccagataaaataaa-cattagagaagacattatggaagtttttgaccatacattttaaaaatagattg |
14335308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 482 - 581
Target Start/End: Complemental strand, 9529138 - 9529042
Alignment:
| Q |
482 |
tttcatgtttccatttccactgataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaa |
581 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |||| |||||||| ||| ||| ||||||||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
9529138 |
tttcttgtttccatttcca-tgataaaataaa-cattttagaagacataattaaagtttttgaaaatagattttaaaaataga-tgaatatttttgaaaa |
9529042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 602
Target Start/End: Original strand, 3370166 - 3370235
Alignment:
| Q |
534 |
gaagattttgaaaatacgttttaaaaatagattgaatctttttgaaaattc-acaaactttcaaaacatt |
602 |
Q |
| |
|
|||| |||||||| ||| || |||||||||||||||| ||||| ||||||| | ||| |||||||||||| |
|
|
| T |
3370166 |
gaagtttttgaaagtacattctaaaaatagattgaatattttttaaaattctaaaaaatttcaaaacatt |
3370235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 548
Target Start/End: Original strand, 5166386 - 5166454
Alignment:
| Q |
479 |
gtgtttcatgtttccatttccactgataaaataaaacattagagaagacaatattgaagattttgaaaat |
548 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| |||||| |||||||||| ||| ||| |||||||||| |
|
|
| T |
5166386 |
gtgtttcctgtttccatttccaccgataaaat-aaacatcagagaagacattatggaaatttttgaaaat |
5166454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 581
Target Start/End: Complemental strand, 29367627 - 29367515
Alignment:
| Q |
468 |
gtttacttcttgtgtttcatgtttccatttccactgataaaataaaacattagagaagacaatattgaagattttgaaaatacgttttaaaaatagattg |
567 |
Q |
| |
|
|||||||| | ||||||| ||||| ||||||||| || ||||||| ||||| | |||||| | | |||| | |||| |||| |||||||||||||||| |
|
|
| T |
29367627 |
gtttacttttggtgtttcttgttttcatttccacagaaaaaataat-cattataaaagacattttggaagttactgaagatacattttaaaaatagattg |
29367529 |
T |
|
| Q |
568 |
aatctttttgaaaa |
581 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
29367528 |
aatatttttgaaaa |
29367515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 4301060 - 4301104
Alignment:
| Q |
469 |
tttacttcttgtgtttcatgtttccatttccactgataaaataaa |
513 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4301060 |
tttacttctggtgtttcctgtttccatttctactgataaaataaa |
4301104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 524
Target Start/End: Complemental strand, 24094339 - 24094285
Alignment:
| Q |
469 |
tttacttcttgtgtttcatgtttccatttccactgataaaataaaacattagagaa |
524 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
24094339 |
tttatttctagtgtttcatgttttcatttccacttataaaataaaa-attagagaa |
24094285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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