View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7594_low_6 (Length: 248)

Name: NF7594_low_6
Description: NF7594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7594_low_6
NF7594_low_6
[»] chr2 (5 HSPs)
chr2 (7-231)||(36594888-36595108)
chr2 (57-94)||(19440824-19440861)
chr2 (57-94)||(25448343-25448380)
chr2 (57-94)||(25452678-25452715)
chr2 (121-189)||(19086390-19086457)
[»] chr4 (5 HSPs)
chr4 (59-94)||(23190764-23190799)
chr4 (59-94)||(25694627-25694662)
chr4 (57-94)||(12662471-12662508)
chr4 (57-94)||(30676985-30677022)
chr4 (57-93)||(1911140-1911176)
[»] chr8 (2 HSPs)
chr8 (57-94)||(30717500-30717537)
chr8 (57-94)||(30725218-30725255)
[»] chr5 (3 HSPs)
chr5 (57-94)||(21174473-21174510)
chr5 (57-94)||(23056660-23056697)
chr5 (57-93)||(35267819-35267855)
[»] chr3 (2 HSPs)
chr3 (57-94)||(15755787-15755824)
chr3 (57-94)||(49490015-49490052)
[»] chr1 (2 HSPs)
chr1 (57-94)||(11657073-11657110)
chr1 (57-94)||(31096219-31096256)
[»] scaffold0014 (1 HSPs)
scaffold0014 (57-93)||(108712-108748)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 36594888 - 36595108
Alignment:
Q  7 ttctgatacaaggcttgaatcttgtaagattgtttctttattctaacaccatatatttgattatgattttcttctttcttattccacatattatggtttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||    
T  36594888 ttctgatacaaggcttgaatcttgtaagattgtttctttattctaacaccagatatttgattatgattttcttctttcatattctacctattatggtttg 36594987  T
Q  107 tttactttaaaaatcctgcaagattgtttccttattttgtgactaaatatttgattatgattttcttatttcttattccataatatttttatgtgagata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36594988 tttactttaaaaatcctgcaagattgtttccttattttgtgactaaatat----ttatgattttcttatttcttattccataatatttttatgtgagata 36595083  T
Q  207 tgacatagtttcttatgaaatgaat 231  Q
    |||||||||||||||||||||||||    
T  36595084 tgacatagtttcttatgaaatgaat 36595108  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 19440861 - 19440824
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  19440861 atatatttgattaagattttcttcttccttattccaca 19440824  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 25448380 - 25448343
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  25448380 atatatttgattaagattttcttcttccttattccaca 25448343  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 25452715 - 25452678
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  25452715 atatatttgattaagattttcttcttccttattccaca 25452678  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 19086390 - 19086457
Alignment:
Q  121 cctgcaagattgtttccttattttgtgactaaatatttgattatgattttcttatttcttattccataa 189  Q
    ||||||| |||||||||||||| | |||  ||| ||||| ||||||||||||| ||||||||| |||||    
T  19086390 cctgcaaaattgtttccttattctatgatcaaa-atttggttatgattttcttctttcttattgcataa 19086457  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 23190764 - 23190799
Alignment:
Q  59 atatttgattatgattttcttctttcttattccaca 94  Q
    |||||||||||||||||| |||||||||||||||||    
T  23190764 atatttgattatgattttattctttcttattccaca 23190799  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 25694662 - 25694627
Alignment:
Q  59 atatttgattatgattttcttctttcttattccaca 94  Q
    |||||||||||||||||| |||||||||||||||||    
T  25694662 atatttgattatgattttattctttcttattccaca 25694627  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 12662508 - 12662471
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12662508 atatatttgattaagattttcttcttccttattccaca 12662471  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 30677022 - 30676985
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  30677022 atatatttgattaagattttcttcttccttattccaca 30676985  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 1911176 - 1911140
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccac 93  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  1911176 atatatttgattaagattttcttcttccttattccac 1911140  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 30717537 - 30717500
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  30717537 atatatttgattaagattttcttcttccttattccaca 30717500  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 30725255 - 30725218
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  30725255 atatatttgattaagattttcttcttccttattccaca 30725218  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 21174510 - 21174473
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  21174510 atatatttgattaagattttcttcttccttattccaca 21174473  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 23056697 - 23056660
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  23056697 atatatttgattaagattttcttcttccttattccaca 23056660  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 35267855 - 35267819
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccac 93  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  35267855 atatatttgattaagattttcttcttccttattccac 35267819  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 15755824 - 15755787
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  15755824 atatatttgattaagattttcttcttccttattccaca 15755787  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 49490052 - 49490015
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  49490052 atatatttgattaagattttcttcttccttattccaca 49490015  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 11657073 - 11657110
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  11657073 atatatttgattaagattttcttcttccttattccaca 11657110  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 31096256 - 31096219
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccaca 94  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  31096256 atatatttgattaagattttcttcttccttattccaca 31096219  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 108712 - 108748
Alignment:
Q  57 atatatttgattatgattttcttctttcttattccac 93  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  108712 atatatttgattaagattttcttcttccttattccac 108748  T

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