View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7594_low_7 (Length: 247)

Name: NF7594_low_7
Description: NF7594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7594_low_7
NF7594_low_7
[»] chr3 (2 HSPs)
chr3 (19-247)||(20223021-20223242)
chr3 (20-88)||(26730893-26730961)
[»] chr5 (2 HSPs)
chr5 (7-88)||(24870451-24870533)
chr5 (20-88)||(30304842-30304910)
[»] chr8 (1 HSPs)
chr8 (20-88)||(26951462-26951530)
[»] chr2 (1 HSPs)
chr2 (20-88)||(28589974-28590042)
[»] chr1 (2 HSPs)
chr1 (20-88)||(27877722-27877790)
chr1 (20-86)||(12539139-12539205)
[»] chr7 (2 HSPs)
chr7 (23-88)||(17852365-17852430)
chr7 (20-88)||(12129512-12129580)
[»] scaffold0010 (1 HSPs)
scaffold0010 (20-88)||(255388-255456)
[»] chr6 (1 HSPs)
chr6 (20-88)||(11657655-11657723)
[»] chr4 (1 HSPs)
chr4 (20-88)||(23059363-23059431)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 20223242 - 20223021
Alignment:
Q  19 ttaggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaaagatttcaattgtcaaaa-tatataaataa 117  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||||  ||||||||||||||||| |||||||| |||||| |||| |||||||||||    
T  20223242 ttaggattagacagggctaccttagctaactcgtgagctatcctatttgcttgccttctgctgaacttaaagattttaattgtaaaaagtatataaataa 20223143  T
Q  118 aatggttgtttttatataaaacaaagatacaaatcacgaacaaattgattgtaatgatcnnnnnnnnctttcttttaatttagtcgagttttgagatcat 217  Q
    || |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |          ||| ||||||||||||||||||||||||||||    
T  20223142 aacggttgtttttatataagacaaagatacaaatcacgaac-aattgattgtaatgtt-------tttttttttttaatttagtcgagttttgagatcat 20223051  T
Q  218 catcatcctcatgtagtacaattaattgtt 247  Q
    ||||||||||||||||||||||||||||||    
T  20223050 catcatcctcatgtagtacaattaattgtt 20223021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 26730893 - 26730961
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| |||||||||| ||||||||| || |||| |||||||  |||||| | |||||||||||    
T  26730893 taggattagatagggctgcctgagctaactcgtgtgctaccctatttgcttgcctccggctgaactcaa 26730961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 24870533 - 24870451
Alignment:
Q  7 aataatatggaa-ttaggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||||  ||||| ||||| |||||||| | ||||||||| || |||||||||||| ||||||||||| |||||||||    
T  24870533 aataatatggaggttagggttagacagggctgcttgagctaactcgtgtgctatcctatttgtttgccttctgttgaactcaa 24870451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 30304910 - 30304842
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| |||||||||| ||||||||| ||||||| |||||||  |||||| | |||||||||||    
T  30304910 taggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaa 30304842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 26951462 - 26951530
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| |||||||||| ||||||||| ||||||| |||||||  |||||| | |||||||||||    
T  26951462 taggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaa 26951530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 28589974 - 28590042
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| |||||||||| ||||||||| ||||||| |||||||  |||||| | |||||||||||    
T  28589974 taggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaa 28590042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 27877790 - 27877722
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| |||| ||||| ||||||||| ||||||| |||||||  |||||| |||||||||||||    
T  27877790 taggattagacagggttgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaactcaa 27877722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 12539205 - 12539139
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactc 86  Q
    |||||||||| | |||||| | ||||||||| |||||||||||||||  |||||| ||| |||||||    
T  12539205 taggattagacatggctgcatcagctaactcgtgagctatcctatttgcttgcctcctgttgaactc 12539139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 17852430 - 17852365
Alignment:
Q  23 gattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    ||||||| |||||||||| ||||||||| ||||||| |||||||  |||||| | |||||||||||    
T  17852430 gattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaa 17852365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 12129580 - 12129512
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||| ||| | |||| ||| ||||||||| ||||||| |||||||  |||||||| |||||||||||    
T  12129580 taggatcagataaggctacctgagctaactcgtgagctaccctatttgcttgccttcggctgaactcaa 12129512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 255388 - 255456
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| |||||||||| ||||||| | ||||||| |||||||  |||||| | |||||||||||    
T  255388 taggattagatagggctgcctgagctaacccgtgagctaccctatttgcttgcctccggctgaactcaa 255456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 11657723 - 11657655
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| |||||| ||| ||||||||| ||||||| |||||||  |||||| | |||||||||||    
T  11657723 taggattagatagggctacctaagctaactcgtgagctaccctatttgcttgcctccggctgaactcaa 11657655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 23059363 - 23059431
Alignment:
Q  20 taggattagagagggctgccttagctaactcatgagctatcctatttatttgccttctgctgaactcaa 88  Q
    |||||||||| ||| |||||| ||||||||| ||||||| |||||||  |||||| | |||||||||||    
T  23059363 taggattagataggactgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaa 23059431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University