View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7594_low_8 (Length: 242)
Name: NF7594_low_8
Description: NF7594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7594_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48031174 - 48031397
Alignment:
| Q |
1 |
tttccctaaaacgtaacaattacagtaattcaaaaaacatgaattaatcaaattattatcagtaaacacgagtttaaaacaaacaaacctcggcaaggac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48031174 |
tttccctaaaacgtaacaattacagtaattcaaaaaatatgaattaatcaaattgttatcagtaaacacgagtttaaaacaaacaaacctcggcaaggac |
48031273 |
T |
|
| Q |
101 |
ttcattgatgagtttctcagcagaagaaacagcatcaggagtacccataagttcaaccatcctagtctgagaattaggatcagcatccatatcacgagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48031274 |
ttcattgatgagtttctcagcagaagaaacagcatcaggagtacccataagttcaaccatcctagtctgagaattaggatcagcatccatatcacgagta |
48031373 |
T |
|
| Q |
201 |
acttgaatcttagcaccagattgc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
48031374 |
acttgaatcttagcaccagattgc |
48031397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48040231 - 48040454
Alignment:
| Q |
1 |
tttccctaaaacgtaacaattacagtaattcaaaaaacatgaattaatcaaattattatcagtaaacacgagtttaaaacaaacaaacctcggcaaggac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48040231 |
tttccctaaaacgtaacaattacagtaattcaaaaaatatgaattaatcaaattgttatcagtaaacacgagtttaaaacaaacaaacctcggcaaggac |
48040330 |
T |
|
| Q |
101 |
ttcattgatgagtttctcagcagaagaaacagcatcaggagtacccataagttcaaccatcctagtctgagaattaggatcagcatccatatcacgagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48040331 |
ttcattgatgagtttctcagcagaagaaacagcatcaggagtacccataagttcaaccatcctagtctgagaattaggatcagcatccatatcacgagta |
48040430 |
T |
|
| Q |
201 |
acttgaatcttagcaccagattgc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
48040431 |
acttgaatcttagcaccagattgc |
48040454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 4459216 - 4459079
Alignment:
| Q |
87 |
acctcggcaaggacttcattgatgagtttctcagcagaagaaacagcatcaggagtacccataagttcaaccatcctagtctgagaattaggatcagcat |
186 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||||||| || || |||||||| |||||| |||| ||||||| ||| | |||||||||||||||||| |
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| T |
4459216 |
acctcagcaagaacttctttgatgagtttctcagcagtagcaatagcatcagaagtaccagtaagctcaaccaatctatttggagaattaggatcagcat |
4459117 |
T |
|
| Q |
187 |
ccatatcacgagtaacttgaatcttagcaccagattgc |
224 |
Q |
| |
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|||||||||| |||||||| || || |||||||||||| |
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|
| T |
4459116 |
ccatatcacgggtaacttggatttttgcaccagattgc |
4459079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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