View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_high_1 (Length: 811)
Name: NF7595_high_1
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Original strand, 4519851 - 4520345
Alignment:
| Q |
10 |
aatatcacgagctctggttaggaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaaagagaattttaaacagcagaaactt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4519851 |
aatatcacgagctctggttaggaaatgttccactgcaaagtcctcaaaattctaaaaccaaaaataacacttaaaagagaattttaaacagcagaaactt |
4519950 |
T |
|
| Q |
110 |
caaggattgaaatgaagtgtaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaaaa |
209 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4519951 |
caaggattgaaatgaagtctaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaaaa |
4520050 |
T |
|
| Q |
210 |
ttgaaaatagagaaggtaacagcaagaaaatagcataagcaatgttacctttttgctacttttgagtgctaaatttgtgacagaaatcatgaaaattaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4520051 |
ttgaaaatagagaaggtaacagcaagaaaatagcataagcaatgtttcatttttgctacttttgagtgctaaacttgtgacagaaatcatgaaaattaac |
4520150 |
T |
|
| Q |
310 |
cgatgttatacttatctcccacagacatatggatacattctaagtagtttaatattcagtgtctgtctcaaacagtagcagacaccacaactattcttga |
409 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4520151 |
cgatgttatacttatctcacacagacatatggatacattctaagtagtttaatattcagtgtctgtctcaaacagtagcagacaccacaactgttcttga |
4520250 |
T |
|
| Q |
410 |
attttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaatttatcacaaacaaagtaaacacttcctataaatttgttt |
504 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520251 |
actttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaatttatcacaaacaaagtaaacacttcctataaatttgttt |
4520345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 503 - 811
Target Start/End: Original strand, 4520377 - 4520685
Alignment:
| Q |
503 |
ttttcaagacatcaacacagataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
602 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520377 |
ttttcaagacatcaacacaaataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
4520476 |
T |
|
| Q |
603 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatnnnnnnn |
702 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520477 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatccccccg |
4520576 |
T |
|
| Q |
703 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaattgaagaaattaaa |
802 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4520577 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaactgaagaaattaaa |
4520676 |
T |
|
| Q |
803 |
agtctcctt |
811 |
Q |
| |
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||||||||| |
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|
| T |
4520677 |
agtctcctt |
4520685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 366 - 504
Target Start/End: Original strand, 8152424 - 8152567
Alignment:
| Q |
366 |
cagtgtctgtctcaaacagtagcagacaccacaactattcttgaattttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| || ||||||| ||||||| |||||||||| |||| |
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| T |
8152424 |
cagtgtctgtctcaaacagtagcagacaccacaactgttcttgaactttccattataactgtttcaatgatcgttcaatgattttaaaacataagtgaac |
8152523 |
T |
|
| Q |
466 |
ttatcacaaacaaagta-----aacacttcctataaatttgttt |
504 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||| |
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| T |
8152524 |
ttatcacaaacaaagtataaagaacacttcgtataaatttgttt |
8152567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 8152599 - 8152635
Alignment:
| Q |
503 |
ttttcaagacatcaacacagataaaaagatacttaca |
539 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
8152599 |
ttttcaagacatcaacacaaataaaaagatacttaca |
8152635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 5838337 - 5838392
Alignment:
| Q |
29 |
aggaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaa |
84 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||| |
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| T |
5838337 |
aggaaatgccccactataaaatcctcaaaattctgaaaccaaaaataacacttaaa |
5838392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 38792158 - 38792212
Alignment:
| Q |
31 |
gaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaaa |
85 |
Q |
| |
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|||||| ||||| ||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
38792158 |
gaaatgctccacaacaaagtcctcgaaattctgaaaccaaaaataactcttaaaa |
38792212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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