View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_high_12 (Length: 407)
Name: NF7595_high_12
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 15874255 - 15873867
Alignment:
| Q |
1 |
tgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15874255 |
tgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaa |
15874156 |
T |
|
| Q |
101 |
tgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttcc-aagaataatgcttgagatt |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15874155 |
tgcccgaatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttcccaagaataatgcttgagatt |
15874056 |
T |
|
| Q |
200 |
ctatgcgaagaaatgggtattgatttggaatttttaattaacaattcttttgatatgggtgaatccaaacgacttggaatggtaatagtcaaattggaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874055 |
ctatgcgaagaaatgggtattgatttggaatttttaattaacaattcttttgatatgggtgaatccaaacgacttggaatggtaatagtcaaattggaaa |
15873956 |
T |
|
| Q |
300 |
atcctaagccctttcatctacttgattttgctcgttcagtgtacttgccacccaatatggtttccaacattcaagaacatggtcaaatg |
388 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
15873955 |
atcctaagccctttcatatacttgattttgctcgttcagtgtacttgccacccaatatggtttccaacattgaagaacatggtaaaatg |
15873867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 15899814 - 15900156
Alignment:
| Q |
1 |
tgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
15899814 |
tgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaa |
15899913 |
T |
|
| Q |
101 |
tgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaataatgcttgagattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
15899914 |
tgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatacttttttgttggagaatcaacttccaaaaataatgcttgagattc |
15900013 |
T |
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| Q |
201 |
tatgcgaagaaatgggtattgatttggaatttttaattaacaattcttttgatatgggtgaatccaaacgacttggaatggtaatagtcaaattggaaaa |
300 |
Q |
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|||||||||||| | || |||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||||| ||| || |||||||||| |
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| T |
15900014 |
tatgcgaagaaacgagtgttgatttggattttttaattaacaattcttttgcaatgggtgcatgcaaacgacttggaatggcaatgctccaattggaaaa |
15900113 |
T |
|
| Q |
301 |
tcctaagccctttcatctacttgattttgctcgttcagtgtac |
343 |
Q |
| |
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|| ||||||||||||| |||||||||||| ||||||||||||| |
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| T |
15900114 |
tcataagccctttcatttacttgattttggtcgttcagtgtac |
15900156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 15920842 - 15921229
Alignment:
| Q |
1 |
tgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
15920842 |
tgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaa |
15920941 |
T |
|
| Q |
101 |
tgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaataatgcttgagattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| | |||||||||||||| |
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| T |
15920942 |
tgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactaatttgttagagaaccagcttccaaacaaaatgcttgagattc |
15921041 |
T |
|
| Q |
201 |
tatgcgaagaaatgggtattgatttggaatttttaattaacaattcttttgatatgggtgaatccaaacgacttggaatggtaatagtcaaattggaaaa |
300 |
Q |
| |
|
||||| ||||| |||| |||||||| ||||||||||||||||| | | || ||||| | |||||| ||||||||||| || |||||||||| |
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| T |
15921042 |
tatgcaaagaagcgggttatgatttgggatttttaattaacaattatgataatttgggtcgaggtaaacgatgcggaatggtaatggttcaattggaaaa |
15921141 |
T |
|
| Q |
301 |
tcctaagccctttcatctacttgattttgctcgttcagtgtacttgccacccaatatggtttccaacattcaagaacatggtcaaatg |
388 |
Q |
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| ||||||||| ||||||||| ||||||||||||||| |||||||| ||||||| | |||||||||| | ||| |||||| |||||| |
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| T |
15921142 |
tactaagccctgtcatctactcgattttgctcgttcattgtacttgtcacccaaaaaggtttccaacgtcgaaggacatggccaaatg |
15921229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 14060666 - 14060426
Alignment:
| Q |
5 |
gatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaatgcc |
104 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| | |
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| T |
14060666 |
gatgcaattgaaggattcaatgacaatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatc |
14060567 |
T |
|
| Q |
105 |
cggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaataatgcttgagattctatg |
204 |
Q |
| |
|
| || | ||||| ||||||||||||||| ||||| | |||||||||||| || ||||| ||||| ||||||||| ||||||||||||| |||| |
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| T |
14060566 |
ccgaagggctaaatcttaagtttgaccaattgatgtatatatggagagatgtttcgttgttagagaaccaacttccataccaaatgcttgagattatatg |
14060467 |
T |
|
| Q |
205 |
cgaagaaatgggtattgatttggaatttttaattaacaatt |
245 |
Q |
| |
|
| | |||| || ||||||||| | |||||| ||||||||| |
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| T |
14060466 |
caatgaaagaggcattgatttgaactttttagttaacaatt |
14060426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 14049295 - 14049119
Alignment:
| Q |
5 |
gatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaatgcc |
104 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||| |||||||||| | |
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| T |
14049295 |
gatgcaattgaaggattcaatgacaacgatcttgcttggatattgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatc |
14049196 |
T |
|
| Q |
105 |
cggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttcca |
181 |
Q |
| |
|
| || | ||||| ||||||||||| ||| ||||| |||||||||||||| | ||||||||||| ||||||||| |
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|
| T |
14049195 |
ctgaagggctaaatcttaagtttgatcaattgatgtacatatggagagatgttaagttgttggagaaccaacttcca |
14049119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 21785704 - 21785739
Alignment:
| Q |
41 |
tggatattgtttgtggatggatgttctttgctacat |
76 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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|
| T |
21785704 |
tggatgttgtttgtggatggatgttctttgctacat |
21785739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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