View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7595_high_2 (Length: 664)

Name: NF7595_high_2
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7595_high_2
NF7595_high_2
[»] chr6 (4 HSPs)
chr6 (19-659)||(34693870-34694509)
chr6 (116-191)||(34697645-34697720)
chr6 (119-191)||(34720416-34720488)
chr6 (313-375)||(34698103-34698164)
[»] chr2 (16 HSPs)
chr2 (19-659)||(26991612-26992251)
chr2 (19-118)||(27031521-27031621)
chr2 (116-191)||(26995305-26995380)
chr2 (116-182)||(27064684-27064750)
chr2 (230-296)||(27072634-27072700)
chr2 (116-191)||(27013291-27013366)
chr2 (197-274)||(27032110-27032189)
chr2 (140-191)||(27032026-27032077)
chr2 (229-272)||(27064639-27064682)
chr2 (197-286)||(27013166-27013258)
chr2 (57-118)||(27073296-27073356)
chr2 (313-372)||(27013019-27013077)
chr2 (48-94)||(4307504-4307550)
chr2 (313-375)||(26995765-26995826)
chr2 (313-342)||(27064512-27064541)
chr2 (622-650)||(27033006-27033034)
[»] chr8 (1 HSPs)
chr8 (397-625)||(44865947-44866177)


Alignment Details
Target: chr6 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Original strand, 34693870 - 34694509
Alignment:
Q  19 ataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattatctaattacactt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34693870 ataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattatctaattacactt 34693969  T
Q  119 cccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttatgaagtactttaaaaacagaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34693970 cccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttacgaagtactttaaaaacagaac 34694069  T
Q  219 aataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacacnnnnnnnaacctt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  34694070 aataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacactttttttaacctt 34694169  T
Q  319 aaaatccaacaaattcatatgaattgacaatcacatgcaaagagttgaagaaattaattaattcagtcatggaattggcctagcggcattgttatcggaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34694170 aaaatccaacaaattcatatgaattgacaatcacatgcaaagagttgaagaaattaattaattcagtcatggaattggcctagcggcattgttatcggaa 34694269  T
Q  419 tttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattactgcgatcatgaattcgatgacgagaaaatcttggttcagcatcagaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  34694270 tttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattac-gcgatcatgaattcgatgacgagaagatcttggttcagcatcagaa 34694368  T
Q  519 agccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacataaaacgtcaccaagta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34694369 agccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacagaaaacgtcaccaagta 34694468  T
Q  619 tactctcaactatgtctattgcagcctctatctctgctact 659  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  34694469 tactctcaactatgtctattgcagcctctatcactggtact 34694509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 34697645 - 34697720
Alignment:
Q  116 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 191  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  34697645 cttcccaaggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaa 34697720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 34720488 - 34720416
Alignment:
Q  119 cccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 191  Q
    ||||| || ||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||    
T  34720488 cccaaggtccatcaccaactccgaccaaaactatagcaagtggatatttactgtatcgtagataaagaatgaa 34720416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 34698103 - 34698164
Alignment:
Q  313 aaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaagagttgaagaaattaa 375  Q
    ||||||||||||||||||||| |||| || | | ||||| ||||||| |||||||||||||||    
T  34698103 aaccttaaaatccaacaaattaatat-aagtcagaatcatatgcaaacagttgaagaaattaa 34698164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Original strand, 26991612 - 26992251
Alignment:
Q  19 ataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattatctaattacactt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26991612 ataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattatctaattacactt 26991711  T
Q  119 cccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttatgaagtactttaaaaacagaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26991712 cccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttacgaagtactttaaaaacagaac 26991811  T
Q  219 aataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacacnnnnnnnaacctt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  26991812 aataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacactttttttaacctt 26991911  T
Q  319 aaaatccaacaaattcatatgaattgacaatcacatgcaaagagttgaagaaattaattaattcagtcatggaattggcctagcggcattgttatcggaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26991912 aaaatccaacaaattcatatgaattgacaatcacatgcaaagagttgaagaaattaattaattcagtcatggaattggcctagcggcattgttatcggaa 26992011  T
Q  419 tttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattactgcgatcatgaattcgatgacgagaaaatcttggttcagcatcagaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  26992012 tttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattac-gcgatcatgaattcgatgacgagaagatcttggttcagcatcagaa 26992110  T
Q  519 agccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacataaaacgtcaccaagta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26992111 agccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacagaaaacgtcaccaagta 26992210  T
Q  619 tactctcaactatgtctattgcagcctctatctctgctact 659  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  26992211 tactctcaactatgtctattgcagcctctatcactggtact 26992251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 27031521 - 27031621
Alignment:
Q  19 ataaaaacatagtggattacaagcttaacta--gttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattatctaattacac 116  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||| |||||||||  |||||| |||||||||||||    
T  27031521 ataaaaacatagtggattacaagcttaactatagttagttactagactgtgcaattacttgttacacaagtaattgtctaagttaa-tatctaattacac 27031619  T
Q  117 tt 118  Q
    ||    
T  27031620 tt 27031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 26995305 - 26995380
Alignment:
Q  116 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 191  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  26995305 cttcccaaggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaa 26995380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 27064750 - 27064684
Alignment:
Q  116 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaata 182  Q
    |||||||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  27064750 cttcccaaggtccatcaccaactccgaccagaactatagcaagtggatatttactgtatcgtaaata 27064684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 27072700 - 27072634
Alignment:
Q  230 aaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcc 296  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  27072700 aaaagagtttgataatagtcctaaataaagaaagttatgtccatggtttgtaaatgaaatttagtcc 27072634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 27013366 - 27013291
Alignment:
Q  116 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 191  Q
    |||||||| || ||||||||||||| |  ||||||||||||||||||||||||||||||| || ||||||||||||    
T  27013366 cttcccaaggtccatcaccaactccgatcagaactatagcaagtggatatttactgtatcatagataaagaatgaa 27013291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 27032110 - 27032189
Alignment:
Q  197 tgaagtactttaaaaacagaacaataagaacagaa--aagagtttcataatagtcctaaataatgaaagttatgttcatg 274  Q
    ||||||| |||||||||||||||||| ||| ||||  || ||| ||||||||||||||||||||||||||| ||| ||||    
T  27032110 tgaagtattttaaaaacagaacaataggaaaagaataaatagtatcataatagtcctaaataatgaaagttgtgtgcatg 27032189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 27032026 - 27032077
Alignment:
Q  140 caactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 191  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  27032026 caaccagaactatagcaagtggatatttactgtatcataaataaagagtgaa 27032077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 27064682 - 27064639
Alignment:
Q  229 gaaaagagtttcataatagtcctaaataatgaaagttatgttca 272  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  27064682 gaaaagagtttcataatagtcctaaataatgaaaggtatgttca 27064639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 27013258 - 27013166
Alignment:
Q  197 tgaagtactttaaaaacagaacaataagaacagaa--aagagtttcataatagtcc-taaataatgaaagttatgttcatggtttctaaatga 286  Q
    ||||||||| |||||||||||||||| ||| ||||  || ||  ||||| |||||| |||||||||||| || ||||||||||||||||||||    
T  27013258 tgaagtactataaaaacagaacaataggaaaagaataaatagcatcatattagtccctaaataatgaaaattgtgttcatggtttctaaatga 27013166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 27073356 - 27073296
Alignment:
Q  57 actagactgtgcaattacttgttagacaggtaattgtcatagttaattatctaattacactt 118  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||| |||||||||||||||    
T  27073356 actagactgtgcaattacttgttacacaagtaattgtctaagttaa-tatctaattacactt 27073296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 27013077 - 27013019
Alignment:
Q  313 aaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaagagttgaagaaat 372  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||  | |||||||||    
T  27013077 aaccttaaaatccaacaa-ttcatatgaattgacaatcatatgcaaactgctgaagaaat 27013019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 4307504 - 4307550
Alignment:
Q  48 tagttagttactagactgtgcaattacttgttagacaggtaattgtc 94  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  4307504 tagttagttactagactctgcaattacttgttacacaagtaattgtc 4307550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 26995765 - 26995826
Alignment:
Q  313 aaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaagagttgaagaaattaa 375  Q
    ||||||||||||||||||||| |||| || | | ||||| ||||||| |||||||||||||||    
T  26995765 aaccttaaaatccaacaaattaatat-aagtcagaatcatatgcaaacagttgaagaaattaa 26995826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 342
Target Start/End: Complemental strand, 27064541 - 27064512
Alignment:
Q  313 aaccttaaaatccaacaaattcatatgaat 342  Q
    ||||||||||||||||||||||||||||||    
T  27064541 aaccttaaaatccaacaaattcatatgaat 27064512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 622 - 650
Target Start/End: Original strand, 27033006 - 27033034
Alignment:
Q  622 tctcaactatgtctattgcagcctctatc 650  Q
    |||||||||||||||||||||||||||||    
T  27033006 tctcaactatgtctattgcagcctctatc 27033034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 397 - 625
Target Start/End: Complemental strand, 44866177 - 44865947
Alignment:
Q  397 cctagcggcattgttatcggaatttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattactgcgatcatgaattcgatgacgaga 496  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  44866177 cctagcggcatctttatctgaatttcgatggggaggaagaagaagcgcgttgcttcaaaggtatggtgttattactgcgatcgtgaattcgatgacgaga 44866078  T
Q  497 aaatcttggttcagcatcagaaagccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggt 596  Q
    | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44866077 agatcttggttcagcatcagaaagccaagcactttaagtgtcacgtttgtcataagaagctttccactgctggtggcatgtccattcacgttcttcaggt 44865978  T
Q  597 ccac--ataaaacgtcaccaagtatactctc 625  Q
    ||||  | |||||||||||||||||| ||||    
T  44865977 ccacaaagaaaacgtcaccaagtatattctc 44865947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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