View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_high_23 (Length: 303)
Name: NF7595_high_23
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_high_23 |
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| [»] scaffold1041 (1 HSPs) |
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| [»] scaffold0466 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 25617811 - 25617530
Alignment:
| Q |
12 |
aagaatagagcacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacatggaaagaatagttgcaa |
111 |
Q |
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| T |
25617811 |
aagaatagagcacataaactcgacacccttctaaaaaagcataaggctaccaatttctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaa |
25617712 |
T |
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| Q |
112 |
aaggctacactgaa-------aagattgattgaaatatagtattttttgcaagtcgctcatcaaatttaccgtaagaatagtactctcacaagatgaaaa |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25617711 |
aaggctacactgaagtctgaaaagattgattgaaatatagtattttttgcaagtcgctcatcaaatttaccgtaagaatagtactctcacaagttgaaaa |
25617612 |
T |
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| Q |
205 |
acacgagttgagagctcctcatatgggcgagaagtatgcctttttgaatgcagtcctatacaataagaaaccatagggatac |
286 |
Q |
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| T |
25617611 |
acacgagttgagagctcctcatatgggcgagaagtatgcctttttgaatgcagtcctatacattaagaaaccatagggatac |
25617530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 25391921 - 25391682
Alignment:
| Q |
24 |
cataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacatggaaagaatagttgcaaaaggctacactg |
123 |
Q |
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| T |
25391921 |
cataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactt |
25391822 |
T |
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| Q |
124 |
aaaagattgattgaaatatagtattttttgcaagtcgctcatcaaatttaccgtaagaatagtactctcacaagatgaaaaacacgagttgagagctcct |
223 |
Q |
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| T |
25391821 |
gaaagattgattgaaatatagtatttttcgcaagtctctcatcaaa-ataccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcct |
25391723 |
T |
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| Q |
224 |
catatgggcgagaagtatgcctttttgaatgcagtcctata |
264 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
25391722 |
catatggacgagaagtatgcctttttgaatggattcctata |
25391682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 25494967 - 25494809
Alignment:
| Q |
71 |
gaaagtgtgcaatgaaggacacatggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatagtattttttgcaagtcgctcatcaaat |
170 |
Q |
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| T |
25494967 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatttagtatttttcgcaagtcgctcatcaaa- |
25494869 |
T |
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| Q |
171 |
ttaccgtaagaatagtactctcacaagatgaaaaacacgagttgagagctcctcatatgg |
230 |
Q |
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| T |
25494868 |
ttaccataagaatagtaatctcacaaattgaaaaacatgagttgagagctcctcatatgg |
25494809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 25358742 - 25358650
Alignment:
| Q |
172 |
taccgtaagaatagtactctcacaagatgaaaaacacgagttgagagctcctcatatgggcgagaagtatgcctttttgaatgcagtcctata |
264 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
25358742 |
taccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacgagaagtatgcctttttgaatggattcctata |
25358650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 25678386 - 25678315
Alignment:
| Q |
158 |
tcgctcatcaaatttaccgtaagaatagtactctcacaagatgaaaaacacgagttgagagctcctcatatgg |
230 |
Q |
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| T |
25678386 |
tcgctcatcaaatt-accgtaagaatagtactttcacaagttgaaaaacatgagttgagagctcctcatatgg |
25678315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 25650451 - 25650413
Alignment:
| Q |
12 |
aagaatagagcacataaactcgacacccttctaaaaaag |
50 |
Q |
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| T |
25650451 |
aagaatagaacacataaactcgacacccttctaaaaaag |
25650413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 811 - 1062
Alignment:
| Q |
12 |
aagaatagagcacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacatggaaagaatagttgcaa |
111 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
811 |
aagaatagaacacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaa |
910 |
T |
|
| Q |
112 |
aaggctacactgaaaagattgattgaaatatagtattttttgcaagtcgctcatcaaatttaccgtaagaatagtactctcacaagatgaaaaacacgag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
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| T |
911 |
aaggctacactgaaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaa-ataccgtaagaatagtactctcacgagttgaaaaacacgag |
1009 |
T |
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| Q |
212 |
ttgagagctcctcatatgggcgagaagtatgcctttttgaatgcagtcctata |
264 |
Q |
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||||||||||||||||||| | |||||| |||||||||||||| ||||||||| |
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| T |
1010 |
ttgagagctcctcatatggacaagaagtgtgcctttttgaatggagtcctata |
1062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 7955 - 8138
Alignment:
| Q |
80 |
caatgaaggacacatggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatagtattttttgcaagtcgctcatcaaatttaccgtaa |
179 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||||||| | ||| ||| |
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| T |
7955 |
caatgaaggacacaaggaaagaatagttgcaaaaggctaagctgaaaatattgattgaaatatagtatttttcgcaagtcactcatcaaaat-accataa |
8053 |
T |
|
| Q |
180 |
gaatagtactctcacaagatgaaaaacacgagttgagagctcctcatatgggcgagaagtatgcctttttgaatgcagtcctata |
264 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||| |
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| T |
8054 |
gaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacaagaactatgcctttttgaatggagtcctata |
8138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 7860 - 7930
Alignment:
| Q |
12 |
aagaatagagcacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaa |
82 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7860 |
aagaatagaacacataaactcgacacccttctaaaaaagcctaaggctaccaatgtctagaaagtgtgcaa |
7930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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