View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_high_31 (Length: 245)
Name: NF7595_high_31
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 54101396 - 54101641
Alignment:
| Q |
1 |
ttgtgtttgacacctctaacatcgcaattctccaagatatcccacgctttgcagctgctgcgatcttcttgaaat----tggtttcatcaacacattgac |
96 |
Q |
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| T |
54101396 |
ttgtatttgacacctctaacatcgcaattctccaagatatcccacgctttgcagctgctgcgatcttctcgaaagaaactggtttcatcaacacattgac |
54101495 |
T |
|
| Q |
97 |
caagatcgaatacagg--tttacaacctttc----------ttcttgttcctgtgataggttgttccacgagcatcagtggagtttcctccaagctcttg |
184 |
Q |
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|||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54101496 |
caagatagaatagagagttttacaacctttcttcttgtttcttcttgttcctgtgataggttgttccacgagcatcagtggagtttcctccaagctcttg |
54101595 |
T |
|
| Q |
185 |
aaacccattctttttaccactttcaacacttcttggaagcaaatat |
230 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54101596 |
aaacccgttctttttaccactttcaacacttcttggaagcaaatat |
54101641 |
T |
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