View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7595_high_33 (Length: 230)

Name: NF7595_high_33
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7595_high_33
NF7595_high_33
[»] chr2 (1 HSPs)
chr2 (18-214)||(8020470-8020666)
[»] chr3 (11 HSPs)
chr3 (22-204)||(27979356-27979538)
chr3 (18-213)||(28150789-28150980)
chr3 (23-214)||(27919226-27919414)
chr3 (18-214)||(28003038-28003229)
chr3 (23-214)||(11419855-11420043)
chr3 (48-213)||(27459971-27460136)
chr3 (54-174)||(17745559-17745680)
chr3 (54-174)||(19046879-19047000)
chr3 (53-214)||(28036288-28036452)
chr3 (78-169)||(28184714-28184805)
chr3 (79-169)||(28160162-28160252)
[»] chr4 (1 HSPs)
chr4 (91-204)||(18010659-18010772)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 8020666 - 8020470
Alignment:
Q  18 ccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020666 ccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtt 8020567  T
Q  118 tgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020566 tgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaata 8020470  T

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Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 27979538 - 27979356
Alignment:
Q  22 caaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 121  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27979538 caaattactttcgaatttgttggtaatattgttgctactgatggcatgtcttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgtt 27979439  T
Q  122 ccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaat 204  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  27979438 ccatttctttctgcataaaaaatagaatgtttgtttcaattacattgcattggtgattgtattcatatgtggttatcttgaat 27979356  T

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Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 28150980 - 28150789
Alignment:
Q  18 ccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtt 117  Q
    ||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  28150980 ccttcaaattacttttgaatttgttggtattattg---ctactgatggcatctcttgttgaggaacattttcaacaaattcatgctttgtctctagtgtt 28150884  T
Q  118 tgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaat 213  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  28150883 tgttccatttcttcctgcatcaaaaat-aaatgtttgattcaaatacattgcattgatgattgtattcatatgtggttaacttgaataaatagaat 28150789  T

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Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 27919414 - 27919226
Alignment:
Q  23 aaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttc 122  Q
    ||||||||| |||||||||||||| |||||   ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27919414 aaattacttctgaatttgttggtattattg---ctactgatggcatcttttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgttc 27919318  T
Q  123 catttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaata 214  Q
     |||||||||||||  || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  27919317 tatttctttctgcacaaagaataaaatgtttgattcaaatacattgtattggtgattgtattcatatgtggttaggttaaataaatagaata 27919226  T

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Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 28003229 - 28003038
Alignment:
Q  18 ccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtt 117  Q
    ||||||||||||||||||||||||||||  |||||   ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  28003229 ccttcaaattacttttgaatttgttggttttattg---ctactgatggcatctcttgatgagggacattttcaacaaattcatgctctgtctctagtgtt 28003133  T
Q  118 tgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaata 214  Q
    |||||||||||||||| ||  |||||||||||||||| ||||||| ||||| ||||| ||| || |||  |||||||||  ||||||||||||||||    
T  28003132 tgttccatttctttctacacaaaaaataaaatgtttgattcaaatgcattggattggcgatagttttc--atgtggttagattgaataaatagaata 28003038  T

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Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 11420043 - 11419855
Alignment:
Q  23 aaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttc 122  Q
    ||||||||| |||||||||||||| |||||   ||| |||||| ||||| ||  |||||||| ||||||||||| ||||||||||| ||||||||||| |    
T  11420043 aaattacttctgaatttgttggtattattg---ctattgatggaatctcatgacgaggaacattttcaacaaatccatgctctgtcactagtgtttgtcc 11419947  T
Q  123 catttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaata 214  Q
     |||||||||||||  ||||||||  | |||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  11419946 aatttctttctgcacaaaaaataatttttttgtttcaaatacattgcattggtgattgtattcataggtggttagcttgaataaatagaata 11419855  T

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Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 213
Target Start/End: Original strand, 27459971 - 27460136
Alignment:
Q  48 tattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaa 147  Q
    |||||||||||||||||||||||| | |||||||||| ||||| ||||||||||| ||||||| |||| ||||||||||||||||||||  |||||||||    
T  27459971 tattgttgctactgatggcatctccttttgaggaacattttcatcaaattcatgccctgtctcaagtggttgttccatttctttctgcacaaaaaataaa 27460070  T
Q  148 atgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaat 213  Q
    ||||||| | |||||| ||||  ||| ||||||||||| ||| | |||| ||| ||||||||||||    
T  27460071 atgtttgatccaaatagattgggttgatgattgtattcgtatattgttagcttaaataaatagaat 27460136  T

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Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 17745559 - 17745680
Alignment:
Q  54 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgca-tcaaaaataaaatgtt 152  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||    
T  17745559 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgttccatttctttctgcacaaaaaaataaaatgtt 17745658  T
Q  153 tgtttcaaatacattgtattgg 174  Q
    || ||||||||||||| |||||    
T  17745659 tgattcaaatacattgcattgg 17745680  T

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Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 19046879 - 19047000
Alignment:
Q  54 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgca-tcaaaaataaaatgtt 152  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||    
T  19046879 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgttccatttctttctgcacaaaaaaataaaatgtt 19046978  T
Q  153 tgtttcaaatacattgtattgg 174  Q
    || ||||||||||||| |||||    
T  19046979 tgattcaaatacattgcattgg 19047000  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 28036452 - 28036288
Alignment:
Q  53 ttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt-----ccatttctttctgcatcaaaaataaa 147  Q
    |||||||||||||||||||||   |||| | | ||||||||||||||||||||||||||||||||| ||     ||||||| |||| || ||||||||||    
T  28036452 ttgctactgatggcatctcttcacgagggaaattttcaacaaattcatgctctgtctctagtgtttcttccatgccatttcattctacaccaaaaataaa 28036353  T
Q  148 atgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaata 214  Q
    |||||||  |||||| ||||| ||||| ||  || |||  |||||||||  || |||||||||||||    
T  28036352 atgtttgactcaaatgcattgcattggcgaaagttttc--atgtggttaggttaaataaatagaata 28036288  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 28184805 - 28184714
Alignment:
Q  78 aggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgt 169  Q
    ||||||| |||| |||| |||||||||||||||| |||||||||   ||| ||||||||  |||||||  |||||||  |||||||||||||    
T  28184805 aggaacattttccacaagttcatgctctgtctctggtgtttgttttgtttttttctgcacaaaaaatagcatgtttgaatcaaatacattgt 28184714  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 28160252 - 28160162
Alignment:
Q  79 ggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgt 169  Q
    |||||| |||| |||| |||||||||||||||| ||||  ||| ||||| ||||||||  |||||||  ||| |||  |||||||||||||    
T  28160252 ggaacattttccacaagttcatgctctgtctctggtgtccgtttcatttttttctgcacaaaaaatagcatggttgaatcaaatacattgt 28160162  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 18010772 - 18010659
Alignment:
Q  91 acaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatg 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  18010772 acaaattcatgctctgtctctagtgtttgttccatttctttctgcataaaaaatagaatgtttgtttcaattacattgcattggtgattgtattcatatg 18010673  T
Q  191 tggttaacttgaat 204  Q
    |||||| |||||||    
T  18010672 tggttatcttgaat 18010659  T

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