View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_10 (Length: 435)
Name: NF7595_low_10
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 47804550 - 47804963
Alignment:
| Q |
1 |
tatctacctaaaacaaagcttggtgaacgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagccagagtagattcc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804550 |
tatctacctaaaacaaagcttggtgatcgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagccagagtagattcc |
47804649 |
T |
|
| Q |
101 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804650 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
47804749 |
T |
|
| Q |
201 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctctcgtttaacttttaggtgttcaacatgatgaaatgtctaatggaatactcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47804750 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatcaaatgtctaatggaatactcttg |
47804849 |
T |
|
| Q |
301 |
caagtttccttcatgcctaaagctatttccatctctgagctctccgatgaagatttcacagaggtacgtgtaaataatttgcagtgaaaatattattatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804850 |
caagtttccttcatgcctaaagctatttccatctctgagctctccgatgaagatttcacagaggtacgtgtaaataatttgcagtgaaaatattattatc |
47804949 |
T |
|
| Q |
401 |
ctggaatacgtatt |
414 |
Q |
| |
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|||||||||||||| |
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| T |
47804950 |
ctggaatacgtatt |
47804963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 47807112 - 47807524
Alignment:
| Q |
1 |
tatctacctaaaacaaagcttggtgaacgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagccagagtagattcc |
100 |
Q |
| |
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|||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47807112 |
tatctacctaaagcgaagcttggtattcgagttatcgaaacagcctgaaagctttgcgagtagggtgattggaacttttgttagagccagagtagattcc |
47807211 |
T |
|
| Q |
101 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807212 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
47807311 |
T |
|
| Q |
201 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctctcgtttaacttttaggtgttcaacatgatgaaatgtctaatggaatactcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807312 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatgaaatgtctaatggaatactcttg |
47807411 |
T |
|
| Q |
301 |
caagtttccttcatgcctaaagctatttccatctctgagctctccgatgaagatttcacagaggtacgtgtaaataatttgcagtgaaaatattattatc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||| || |||| || |
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| T |
47807412 |
caagtttccttcatgcctaaagctatttccatttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaacta-tattttc |
47807510 |
T |
|
| Q |
401 |
ctggaatacgtatt |
414 |
Q |
| |
|
||||||||| |||| |
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|
| T |
47807511 |
ctggaatacatatt |
47807524 |
T |
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