View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_11 (Length: 425)
Name: NF7595_low_11
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_11 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 54100769 - 54101193
Alignment:
| Q |
1 |
ttttcatcagattcgtgagatttaaaattcttgtaaaatagtcggccaccatcccttaattctcttcaccctcatttatgtctaacatgttggtttgaac |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54100769 |
ttttcatgagattcgtgagatttaaaattcttgtaaaatagccggccaccatcccttaattctcttcaccctcatttatgtctaacatgttggtttgaac |
54100868 |
T |
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| Q |
101 |
ccacacccttccaaccttctagtactagggttgaacctgcgttgagaaagcatacgtgatatccttggtttgaatttggaattggatcctacccctttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54100869 |
ccacacccttccaaccttctagtactagggttgaacatgcgttgagaaagcatacgtgatatccttggtttgaatttggaattggatcctacccctttgt |
54100968 |
T |
|
| Q |
201 |
ttgccacacatttatcgtgtctaaatcttgtgaagttttatgtcagtttaatttctgtagcttttgtacaaatgtgcgttttcttgcctcttaaaagtgt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54100969 |
ttgccacacatttgtcgtgtctaaatcttgtgaagttttatgtcagtttaatttctgtagcttttgtacaaatgtgcgttttcttgcctcttgaaagtgt |
54101068 |
T |
|
| Q |
301 |
tcccaaatgtacgtcacaaagacatgaccgttaggaacactcttcattgtgaagacacatccttaagggtagccttgatactaattgatggaaaagacgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54101069 |
tcccaaatgtacgtcacaaagacatgaccgttaggaacactcttcattgtgaagacacatccttaagggtagccttgatactaattgatggaaaagacgc |
54101168 |
T |
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| Q |
401 |
gtcactgttatactcgacatcattg |
425 |
Q |
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|||||| |||||||||||||||||| |
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| T |
54101169 |
gtcactattatactcgacatcattg |
54101193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 54100346 - 54100768
Alignment:
| Q |
1 |
ttttcatcagattcgtgagatttaaaattcttgtaaaatagtcggccaccatcccttaattctcttcaccctcatttatgtctaacatgttggtttgaac |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54100346 |
ttttcatgagattcgtgagatttaaaattcttgtaaaatagtcggccaccttcccttagttctcttcaccctcatttatgtctaacatgttggtttgaac |
54100445 |
T |
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| Q |
101 |
ccacacccttccaaccttctagtactagggttgaacctgcgttgagaaagcatacgtgatatccttggtttgaatttggaattggatcctacccctttgt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54100446 |
ccacacccttccaaccttctagtactatggttgaacatgcgttgagaaagcatacatgatatccttggtttgaatttggaattggatcctacccctttgt |
54100545 |
T |
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| Q |
201 |
ttgccacacatttatcgtgtctaaatcttgtgaagttttatgtcagtttaatttctgtagcttttgtacaaatgtgcgttttcttgcctcttaaaagtgt |
300 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
54100546 |
ttgccacacatttatcgtgtctaaatattgtgaag--ttatgtaagtttaatttctgtagcttttgtacaaatgtgctttttcttgcctcttgaaagtgt |
54100643 |
T |
|
| Q |
301 |
tcccaaatgtacgtcacaaagacatgaccgttaggaacactcttcattgtgaagacacatccttaagggtagccttgatactaattgatggaaaagacgc |
400 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54100644 |
tcccaaatgtacgccacaaagacatgactgttaggaacactcttcattgtgaagacacatccttaagggtagccttgatactaattgatggaaaagatgc |
54100743 |
T |
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| Q |
401 |
gtcactgttatactcgacatcattg |
425 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
54100744 |
gtcactgttatactcgacatcattg |
54100768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 65 - 424
Target Start/End: Original strand, 54099979 - 54100344
Alignment:
| Q |
65 |
ttcaccctcatttatgtctaacatgttggtttgaacccacacccttccaaccttctagtactagggttgaacctgcgttgagaaagcatacgtgatatcc |
164 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54099979 |
ttcaccctcatttatgtctaatatgttggtttgaacccacacccttccaaccttc-agtactagggttgaacctgcgttgagaaagcatacgtgatatcc |
54100077 |
T |
|
| Q |
165 |
ttggtttgaatttggaattggatcct---------acccctttgtttgccacacatttatcgtgtctaaatcttgtgaagttttatgtcagtttaatttc |
255 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
54100078 |
ttgatttgaatttggaattggatcctacccttcctacccctttgtttgccacacatttatcatgtctaaatcttgtgaagttttatgtaagtttaatttt |
54100177 |
T |
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| Q |
256 |
tgtagcttttgtacaaatgtgcgttttcttgcctcttaaaagtgttcccaaatgtacgtcacaaagacatgaccgttaggaacactcttcattgtgaaga |
355 |
Q |
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|||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
54100178 |
tgtagcttttgtacaaatgtctgttttcttgtctcttgaaagtgttcacaaatgtacgccacaaagacatgactgttaggaacactcttcattgtgaaga |
54100277 |
T |
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| Q |
356 |
cacatccttaagggtagccttgatactaattgatggaaaagacgcgtcactgttatactcgacatcatt |
424 |
Q |
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|||||||||||| ||| ||||| ||||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
54100278 |
cacatccttaagtgtatccttgttactaattgatggaaaagatgtgtcac--ttatactcgacatcatt |
54100344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 54101194 - 54101257
Alignment:
| Q |
1 |
ttttcatcagattcgtgagatttaaaattcttgtaaaatagtcggccaccatcccttaattctc |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
54101194 |
ttttcatcagattcgtgagatttaaaattcttgtaaaatagtcgaccaccttcccttaattctc |
54101257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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