View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_13 (Length: 404)
Name: NF7595_low_13
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 28233235 - 28233607
Alignment:
| Q |
17 |
catcaagattctttttatttgctttattttattgattatgtaaatcatttgatcatgagtgagtagtctcttgtaatttcgggggtttgggaaaaatcca |
116 |
Q |
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| T |
28233235 |
catcaagattttttttatttgctttattttattgattatgtatctcatttgatcatgagtgagtagtctcttgtagtttcgggggtttgggaaaaatcca |
28233334 |
T |
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| Q |
117 |
acgacttaatcttcctaaactcata-atcttgtatcttttgtgagatttaattttcgatctaattttggtttgtcataaattaaggatatgagcaattga |
215 |
Q |
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| T |
28233335 |
acgacttaatcttcctaaactcatatatcttgtatcttttgtgagatttaatttccgatctaattttgatttgtcataaattaaggatatgagcaattga |
28233434 |
T |
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| Q |
216 |
tttacttaatttagatgttggatcgataaatgaaaatgaagatccaatgtccgatctacaagattgttcaaaagaatcgacatatgagaataatttagat |
315 |
Q |
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| T |
28233435 |
tttacttaatttagatgttggatcgataaatgaaaatgaagatccaatgtccgatctacaagattgttcaaaagaatcgacatatgagaataatttagat |
28233534 |
T |
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| Q |
316 |
acctttgagatgattatgcttcaagggtcttgataacgattttttccaagtgaataggataaattgtctaatt |
388 |
Q |
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| T |
28233535 |
agttttgagatgattatgcttcaagggtcttgataacgattttttccaagtgaataggataaattgtctaatt |
28233607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 12008982 - 12008921
Alignment:
| Q |
265 |
tccgatctacaagattgttcaaaagaatcgacatatgagaataatttagatacctttgagat |
326 |
Q |
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| T |
12008982 |
tccgatttataagattgaacaaaagaatcgacacatgagaatagtttagattcttttgagat |
12008921 |
T |
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