View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_14 (Length: 395)
Name: NF7595_low_14
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 8944474 - 8944108
Alignment:
| Q |
1 |
aacttcacaaaatcataagccaatttgatggtttactcattagtactgctgagctgatcaaatattatatacaaagcatgatgcacctttttctttgaca |
100 |
Q |
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| T |
8944474 |
aacttcacaaaatcataggccaatttgatggtttactcgt---cactgctgagctgatcaaacattatatacaaagcatgatgcacctttttctttgaca |
8944378 |
T |
|
| Q |
101 |
aagtatatatgctgactttacaatgtacctagccacggagtcgtgtatccaaatcaatttgtccaaaaaatctgcactaatagtgatccctgcaatgaca |
200 |
Q |
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| T |
8944377 |
aagtatatatgctgactttacagtgtacctagccacggagtcgtgtctccaaatcaatttgtccgaaaaatctgcactaatagtgatccctgcaatgaca |
8944278 |
T |
|
| Q |
201 |
gcctctgactcaagcactaatagtgatccctttcacgagaacaaaggttgtctccagttcatgatccactcccatctgtcatccgcgcacactcttactt |
300 |
Q |
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| T |
8944277 |
gcctctgactcaagcaataatagtgatccctttcacgagaacaaaggttgtctccagttcatgctccactcccatct-------gcgcgcactcctactt |
8944185 |
T |
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| Q |
301 |
ccgatacagtttcgtacctgtttcttgcaataaaaataagccttgggaacttctcatgcaatattaaacttccagcc |
377 |
Q |
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| T |
8944184 |
ccgatacagtttcggacctgtttcttgcaatagaaataagccttgggaacttctcatgcaatattaaacttccagcc |
8944108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 43564406 - 43564510
Alignment:
| Q |
102 |
agtatatatgctgactttacaatgtacctagccacggagtcgtgtatccaaatcaatttgtccaaaaaatctgcactaatagtgatccctgcaatgacag |
201 |
Q |
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||||||||||| |||||||| |||||| |||||||||||| ||| || ||| | |||||||| ||||||||||||| | ||||||||||||||| |||| |
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| T |
43564406 |
agtatatatgcagactttaccgtgtacccagccacggagtcatgtctctaaacccatttgtccgaaaaatctgcactcacagtgatccctgcaataacag |
43564505 |
T |
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| Q |
202 |
cctct |
206 |
Q |
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||||| |
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| T |
43564506 |
cctct |
43564510 |
T |
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