View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_16 (Length: 393)
Name: NF7595_low_16
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 153 - 393
Target Start/End: Complemental strand, 3585552 - 3585307
Alignment:
| Q |
153 |
tagaaaaatgctttctcttttgacatgtggcgttaccaaaaattggataacactagaacacgtgtgttaatacttaccacaatcacttcctgcactgcac |
252 |
Q |
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| T |
3585552 |
tagaaaaatgctttctcttttgacatgtggcgttaccaaaaattggataacactagaacacgtgtgttaatacttaccacaatcactacctgcactgcac |
3585453 |
T |
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| Q |
253 |
taca-----accttggagattaacttttccttcctcattgcttataccttccttatacgcgatggcactgaattcattcacaccactttcaatcaattct |
347 |
Q |
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| T |
3585452 |
tacactacaaccttgttaatttttccttccttcctcattgcttataccttccttatacgcgatggcactgaattcattcacaccactttcaatcaattct |
3585353 |
T |
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| Q |
348 |
caccatgtttcttgttacccttcaagttccaaggtttcaaagtcct |
393 |
Q |
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| T |
3585352 |
caccatgtttcttgttacccttcaagttccaaggtttcaaagtcct |
3585307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 3585673 - 3585560
Alignment:
| Q |
12 |
agagagaacaagtaaa-ggaagggttggtttttcttgagaacgattgaaa-------gggttttagggcgaaattgggaattaaatctcaacaaagggta |
103 |
Q |
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| T |
3585673 |
agagagaacaagtaaaaggaagggttggtttttcttgagaacgattgaaacttgaaagggttttagggcgaaattgtgaattaaatctcaacaaagggta |
3585574 |
T |
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| Q |
104 |
attttgtcatttag |
117 |
Q |
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| T |
3585573 |
attttgtcatttag |
3585560 |
T |
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