View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7595_low_17 (Length: 377)
Name: NF7595_low_17
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 55016250 - 55016602
Alignment:
| Q |
18 |
cttatagtgccgttgataaggaaacggaaagtttacgtgaaaagtgatggaaaatgtggagatcccgaaatggtaacttccgactaatcataactaactt |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55016250 |
cttatagcgccgttgataaggaaacggaaagtttacgtggaaagtgatggaaaatgtggagatcccgaaatggtaacttccgactaatcataactaactt |
55016349 |
T |
|
| Q |
118 |
ttaactactttgtatttggtactacaaattttggaggtaatataattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55016350 |
ttaactactttgtatttggtactacaaattttggaggtaatataattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaa |
55016449 |
T |
|
| Q |
218 |
gttaatgtgcttgtctagattaaacatcaacnnnnnnnnnnnaattaatatttgcatatgtttgagaccaaattaaaatttgttataagtattttaaaga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
55016450 |
gttaatgtgcttgtctagattaaacatcaac---ttttttttaattaatctttgcatatgtttgagaccaaattaaaatttgttatatgtattttaaaga |
55016546 |
T |
|
| Q |
318 |
atattgaactaattctaattaatatgcatctataggtgacaggtgagtgccattgg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
55016547 |
atattgaactaattctaattaatatgcaactatatgtgacaggtgagtgccattgg |
55016602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 7974890 - 7974854
Alignment:
| Q |
189 |
aaaatataaacaaaaattggtcaaataaagttaatgt |
225 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7974890 |
aaaatataaacaaaaattggtcaataaaagttaatgt |
7974854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University