View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7595_low_20 (Length: 340)

Name: NF7595_low_20
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7595_low_20
NF7595_low_20
[»] chr2 (4 HSPs)
chr2 (12-169)||(3342346-3342503)
chr2 (12-91)||(3334970-3335049)
chr2 (235-282)||(31395288-31395335)
chr2 (235-304)||(38288549-38288620)
[»] chr6 (3 HSPs)
chr6 (235-308)||(9627236-9627307)
chr6 (235-308)||(1415485-1415558)
chr6 (244-308)||(12155952-12156016)
[»] chr8 (2 HSPs)
chr8 (250-304)||(14958005-14958059)
chr8 (213-284)||(4490289-4490358)
[»] chr3 (2 HSPs)
chr3 (243-292)||(43361591-43361640)
chr3 (235-277)||(8540994-8541036)
[»] chr1 (4 HSPs)
chr1 (247-304)||(6397771-6397826)
chr1 (216-284)||(41941065-41941131)
chr1 (213-284)||(37259020-37259089)
chr1 (236-284)||(42517114-42517162)
[»] chr7 (1 HSPs)
chr7 (240-278)||(43814455-43814493)
[»] chr5 (1 HSPs)
chr5 (237-298)||(7237188-7237249)
[»] scaffold0154 (1 HSPs)
scaffold0154 (243-298)||(19338-19391)
[»] chr4 (1 HSPs)
chr4 (11-51)||(35791523-35791563)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 3342346 - 3342503
Alignment:
Q  12 aagaatataaagggcttacatttgctacatttcgaggagctggccatgatgtgcctacttttaaaccaagcaattcacttgtannnnnnncctcatttct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  3342346 aagaatataaagggcttacatttgctacatttcgaggagctggccatgatgtgcctacttttaaaccaagcaattcacttgtatttttttcctcatttct 3342445  T
Q  112 tgcgggaaaatcactaccttctataagatgaaaatcaagattctacttttgggatgag 169  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3342446 tgcgggacaatcactaccttctataagatgaaaatcaagattctacttttgggatgag 3342503  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 3334970 - 3335049
Alignment:
Q  12 aagaatataaagggcttacatttgctacatttcgaggagctggccatgatgtgcctacttttaaaccaagcaattcactt 91  Q
    |||||||| |||| ||||| |||||||||||| |||||||||| ||||  |||||   ||||||||||||||||||||||    
T  3334970 aagaatatgaaggacttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcactt 3335049  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 31395335 - 31395288
Alignment:
Q  235 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaat 282  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  31395335 gaatcgtagtagtactatatatattgcttgtaacactgaaaccctaat 31395288  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 38288620 - 38288549
Alignment:
Q  235 gaatcgtagtagtactatatatat--tgcttgtaaaactgaaaccttaattcttatcacagaaatagaaaca 304  Q
    |||||||||||||| |||||||||  ||||| ||| | ||||||| ||||||| |||| |||||||||||||    
T  38288620 gaatcgtagtagtattatatatatattgcttataacattgaaaccctaattctcatcatagaaatagaaaca 38288549  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 9627307 - 9627236
Alignment:
Q  235 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaac 308  Q
    ||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||  |||||||||||||    
T  9627307 gaatcgtagtagtactatatat--tgcttgtaacactgaaaccctaattcttatcacagtgatagaaacagaac 9627236  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 1415485 - 1415558
Alignment:
Q  235 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaac 308  Q
    ||||| |||||||||||||||||   ||||||| | ||||||| ||||||||||||||  ||||||||||||||    
T  1415485 gaatcatagtagtactatatatacaacttgtaacattgaaaccctaattcttatcacaataatagaaacagaac 1415558  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 12156016 - 12155952
Alignment:
Q  244 tagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaac 308  Q
    ||||||||||||||  | |||||| ||||||| | ||||||||||||||| ||||||||| ||||    
T  12156016 tagtactatatatacagtttgtaacactgaaatcctaattcttatcacagtaatagaaacggaac 12155952  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 14958005 - 14958059
Alignment:
Q  250 tatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaaca 304  Q
    |||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||    
T  14958005 tatatatattgcttgtaacactgaaaccctaattcttctcacagtaatagaaaca 14958059  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 4490289 - 4490358
Alignment:
Q  213 ggataatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 284  Q
    ||||| ||||||||||||||||  ||  | ||| ||||||||||||||| || || ||||||||||||||||    
T  4490289 ggatattattgtaaactgaatc--ataattgtattactatatatattgcatgcaacactgaaaccttaattc 4490358  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 43361591 - 43361640
Alignment:
Q  243 gtagtactatatatattgcttgtaaaactgaaaccttaattcttatcaca 292  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  43361591 gtagtactatatatattgcatgtaatactgaaaccttaattctcatcaca 43361640  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 8540994 - 8541036
Alignment:
Q  235 gaatcgtagtagtactatatatattgcttgtaaaactgaaacc 277  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  8540994 gaatcgtagtagtactatatatacagcttgtaaaacagaaacc 8541036  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 6397826 - 6397771
Alignment:
Q  247 tactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaaca 304  Q
    ||||||||||||||||||||| |||||||||||| |||  ||||||| ||||||||||    
T  6397826 tactatatatattgcttgtaacactgaaaccttagttc--atcacagtaatagaaaca 6397771  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 41941065 - 41941131
Alignment:
Q  216 taatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 284  Q
    ||||||||||||||||||||  | ||||||||| |||||||||| ||||||| | ||||||| ||||||    
T  41941065 taatattgtaaactgaatcg--tagtagtagtagtatatatattacttgtaacattgaaaccctaattc 41941131  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 37259020 - 37259089
Alignment:
Q  213 ggataatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 284  Q
    |||||||||||||| |||||||  || ||||| ||||||||||| ||| | |||||| ||||||||||||||    
T  37259020 ggataatattgtaagctgaatc--atagtagtggtactatatatgttgttggtaaaattgaaaccttaattc 37259089  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 42517114 - 42517162
Alignment:
Q  236 aatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 284  Q
    ||||||||||||||||||||||||| |||||| || |||||| ||||||    
T  42517114 aatcgtagtagtactatatatattgtttgtaacaccgaaaccctaattc 42517162  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 43814493 - 43814455
Alignment:
Q  240 gtagtagtactatatatattgcttgtaaaactgaaacct 278  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  43814493 gtagtagtgctatatatattgcttgtaacactgaaacct 43814455  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 7237249 - 7237188
Alignment:
Q  237 atcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaata 298  Q
    ||||||||||||||||||| |   ||||||| || |||||| ||||||||||||||| ||||    
T  7237249 atcgtagtagtactatatacacaacttgtaacaccgaaaccctaattcttatcacagtaata 7237188  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 19338 - 19391
Alignment:
Q  243 gtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaata 298  Q
    |||||||||||||||||| |||||| | ||||||| ||||||  ||||||||||||    
T  19338 gtagtactatatatattgtttgtaacagtgaaaccctaattc--atcacagaaata 19391  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 35791563 - 35791523
Alignment:
Q  11 gaagaatataaagggcttacatttgctacatttcgaggagc 51  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  35791563 gaagaatatcaagggcttacatttgcaacatttagaggagc 35791523  T

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