View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_22 (Length: 316)
Name: NF7595_low_22
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 11993880 - 11994051
Alignment:
| Q |
19 |
agcgaggtacaagatggaaggttggtagtggagagaatatccatgtgttttatgacaattggtt-agcaaacaagagcatggaacaaccattgatgcaca |
117 |
Q |
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| T |
11993880 |
agcgaggtacaagatggaaggttggtagtggagagaatatccgggtgttttatgacaattggtttagcaaacaagagcatggaacaaccattgatgcaca |
11993979 |
T |
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| Q |
118 |
ttgtactgaatcagcaacttaaagtccgagatttgctgcagaatgggccaaaaaatggaataggatgaatca |
189 |
Q |
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| T |
11993980 |
ttgtactgaatcagcaacttaaagtccgagatttgctgcagaatgggccaaaaaatggaacaggatgaatca |
11994051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 191 - 308
Target Start/End: Complemental strand, 12249308 - 12249191
Alignment:
| Q |
191 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
290 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12249308 |
caacttgagtggtgttgttgattttcaactcttttccaaacttcattggttgttttttctgtccctttcacataatagccaattatcactaacctttgaa |
12249209 |
T |
|
| Q |
291 |
tcccatgtcagtttcatt |
308 |
Q |
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||| |||||||||||||| |
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| T |
12249208 |
tccaatgtcagtttcatt |
12249191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 11994048 - 11994081
Alignment:
| Q |
275 |
atcactaacctttgaatcccatgtcagtttcatt |
308 |
Q |
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| T |
11994048 |
atcactaacctttgaatccaatgtcagtttcatt |
11994081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 8349385 - 8349254
Alignment:
| Q |
32 |
atggaaggttggtagtggagagaatatccatgtgttttatgacaattggttagcaaacaagagcatggaacaaccattgatgcacattgtactgaatcag |
131 |
Q |
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|||||||||||||||||| ||||| ||| || ||| ||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||| |
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| T |
8349385 |
atggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagagcgtgtcacaaccattgatgcacattgtaccgaatcag |
8349286 |
T |
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| Q |
132 |
caacttaaagtccgagatttgctgcagaatgg |
163 |
Q |
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||| ||| |||| |||||||||| |||||| |
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| T |
8349285 |
caatttaccgtccatgatttgctgccgaatgg |
8349254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 42129709 - 42129600
Alignment:
| Q |
191 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
290 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| | | |||| |||||| |||||||||||||||||||||||| |||| |||||| |
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| T |
42129709 |
caacttgagtgatgttattgattttcaacacttttccaaacttcaatatttgaaaactctgtcactttcacataatagccaattatcattaacatttgaa |
42129610 |
T |
|
| Q |
291 |
tcccatgtca |
300 |
Q |
| |
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|| |||||| |
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|
| T |
42129609 |
cccaatgtca |
42129600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 34239826 - 34239926
Alignment:
| Q |
191 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
290 |
Q |
| |
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|||||||||| ||||||| |||||||| ||||| | |||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34239826 |
caacttgagtggtgttgtcaattttcaagactttacaaaacttcaaaaattggattctctgtccctttcacataatagccaattatcactaaactttgaa |
34239925 |
T |
|
| Q |
291 |
t |
291 |
Q |
| |
|
| |
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|
| T |
34239926 |
t |
34239926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 303
Target Start/End: Original strand, 34232074 - 34232186
Alignment:
| Q |
191 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
290 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| ||||||| | ||| || | ||||||||||||| |||| ||||||||||||||||||||| |
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| T |
34232074 |
caacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaa |
34232173 |
T |
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| Q |
291 |
tcccatgtcagtt |
303 |
Q |
| |
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||| ||||||||| |
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| T |
34232174 |
tccaatgtcagtt |
34232186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 303
Target Start/End: Original strand, 41571279 - 41571391
Alignment:
| Q |
191 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
290 |
Q |
| |
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|||||||||| || |||| ||||| || |||||||||||||| | |||| || ||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
41571279 |
caacttgagtggtattgtcaattttaaatacttttccaaacttcaaaatttgaattctctgtccctttcacataatagtcaattatcaccgaactttgaa |
41571378 |
T |
|
| Q |
291 |
tcccatgtcagtt |
303 |
Q |
| |
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||| ||||||||| |
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| T |
41571379 |
tccaatgtcagtt |
41571391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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