View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7595_low_29 (Length: 250)

Name: NF7595_low_29
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7595_low_29
NF7595_low_29
[»] chr4 (2 HSPs)
chr4 (19-250)||(51862051-51862277)
chr4 (16-216)||(39482305-39482500)
[»] chr3 (3 HSPs)
chr3 (75-250)||(22157786-22157962)
chr3 (16-111)||(22157700-22157790)
chr3 (22-214)||(9765844-9766030)
[»] chr7 (3 HSPs)
chr7 (87-250)||(9332858-9333021)
chr7 (19-111)||(9332763-9332849)
chr7 (214-250)||(27273125-27273161)
[»] chr8 (3 HSPs)
chr8 (23-79)||(22647851-22647907)
chr8 (87-152)||(22647938-22648003)
chr8 (96-214)||(43651549-43651666)
[»] scaffold0755 (2 HSPs)
scaffold0755 (87-152)||(5435-5500)
scaffold0755 (23-79)||(5531-5584)
[»] chr5 (3 HSPs)
chr5 (22-214)||(21114689-21114875)
chr5 (87-152)||(27030052-27030117)
chr5 (23-79)||(27030148-27030204)
[»] chr6 (2 HSPs)
chr6 (19-79)||(13550189-13550249)
chr6 (214-250)||(13550382-13550418)
[»] chr2 (1 HSPs)
chr2 (46-74)||(24863506-24863534)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 51862277 - 51862051
Alignment:
Q  19 accaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaaccaatag 118  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||||||| |||| |    
T  51862277 accaactaaatcatccattcatactgaaattgaaattaaaaataagaaatgtaagatgaaa-----gtatgtatctttctctttgttctgaaatcaatgg 51862183  T
Q  119 atgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttggaacaa 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  51862182 atgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttccctagctaaatatagatgaaatgtctcttcaattgtaatatggaacaa 51862083  T
Q  219 tagaaccgctcattcctcaattctcattagca 250  Q
    ||||| ||||||||||||||||||||||||||    
T  51862082 tagaatcgctcattcctcaattctcattagca 51862051  T

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Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 39482305 - 39482500
Alignment:
Q  16 atgaccaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaaccaa 115  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  39482305 atgaccaactaaatcatccattcatactgaaattgaatttaaaaataagaagtgtaagatga-----aagtatgtatctttctctttgttctgaaaccaa 39482399  T
Q  116 tagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttggaa 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39482400 tggatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttggaa 39482499  T

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Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 22157786 - 22157962
Alignment:
Q  75 tgaaatgaaagta-tgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccct 173  Q
    ||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  22157786 tgaaatgaaagaaatgtatctttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaatcctgtcatgtttccct 22157885  T
Q  174 atctaaatatagatgaaatgtctcttcaattgtaatttggaacaatagaaccgctcattcctcaattctcattagca 250  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22157886 atctaaatatagatgaaatgtctcttcaattgtaatctggaacaatagaaccgctcattcctcaattctcattagca 22157962  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 22157700 - 22157790
Alignment:
Q  16 atgaccaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 111  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||     |||||||||||||||||||||||||||||||||    
T  22157700 atgaccaactaaatcatccattcatactgaaattgaaattgaaattaagaagtgtaag-----atgaaagtatgtatctttctctttgttctgaaa 22157790  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 9766030 - 9765844
Alignment:
Q  22 aactaaatcatccattcatgctggaattgaaattaaaaa-taagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaaccaatagat 120  Q
    |||||||| |||||||||| ||  ||||||||||||||| |||||||||| | ||| | |||||   |||||||  ||||||||||||||| || | |||    
T  9766030 aactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatgga-tgaaa---tgtatct--ctctttgttctgaaatcattggat 9765937  T
Q  121 gataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgtaatttgga 214  Q
     ||| ||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | ||||||||||||||| |||||||||||||||    
T  9765936 catagaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtctcttgcaattgtaatttgga 9765844  T

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Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 9332858 - 9333021
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatataga 186  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  9332858 atgtatttttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttccctatctaaagataga 9332957  T
Q  187 tgaaatgtctcttcaattgtaatttggaacaatagaaccgctcattcctcaattctcattagca 250  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9332958 tgaaatgtctcttcaattgtaatctggaacaatagaaccgctcattcctcaattctcattagca 9333021  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 9332763 - 9332849
Alignment:
Q  19 accaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 111  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||    
T  9332763 accaactaaatcatccattcatactgaaattgaaattaaaaataagaagtgtaag-----atgaaagtatgtat-tttctctttgttctgaaa 9332849  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 27273125 - 27273161
Alignment:
Q  214 aacaatagaaccgctcattcctcaattctcattagca 250  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  27273125 aacaatagagccgctcaatcctcaattctcattagca 27273161  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 22647851 - 22647907
Alignment:
Q  23 actaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  22647851 actaaataatccattcatactgaaattgaaattaaaaataagaagtgtaagatgaaa 22647907  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 22647938 - 22648003
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 152  Q
    |||||||||| ||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  22647938 atgtatctttatctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 22648003  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 43651549 - 43651666
Alignment:
Q  96 tctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtc 195  Q
    |||||||||| ||||| || | ||| ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | |||||||||||    
T  43651549 tctctttgttatgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtc 43651646  T
Q  196 tctt-caattgtaatttgga 214  Q
    |||| |||||||||||||||    
T  43651647 tcttgcaattgtaatttgga 43651666  T

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Target: scaffold0755 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 5500 - 5435
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 152  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  5500 atgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 5435  T

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Target: scaffold0755; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 5584 - 5531
Alignment:
Q  23 actaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||||| |||||||||| ||| ||||||||||||||||   |||||||||||||||    
T  5584 actaaataatccattcatactgaaattgaaattaaaaat---aagtgtaagatgaaa 5531  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 21114689 - 21114875
Alignment:
Q  22 aactaaatcatccattcatgctggaattgaaattaaaaa-taagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaaccaatagat 120  Q
    |||||||| || ||||||| ||  ||||||||||||||| |||||||||| | || | ||||||   |||||||  ||||||||||||||| || | |||    
T  21114689 aactaaattattcattcatactaaaattgaaattaaaaaataagaagtgtcaaat-agatgaaa---tgtatct--ctctttgttctgaaatcattggat 21114782  T
Q  121 gataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgtaatttgga 214  Q
     ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | ||||||||||||||| |||||||||||||||    
T  21114783 cataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtctcttgcaattgtaatttgga 21114875  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 27030117 - 27030052
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 152  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  27030117 atgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 27030052  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 27030204 - 27030148
Alignment:
Q  23 actaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  27030204 actaaataatccattcatactaaaattgaaattaaaaataagaagtgtaagatgaaa 27030148  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 13550189 - 13550249
Alignment:
Q  19 accaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||||||||| |||||||||| ||| ||||||||| |||||||||||||||| |||||||    
T  13550189 accaactaaattatccattcatactgaaattgaaataaaaaataagaagtgtatgatgaaa 13550249  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 13550382 - 13550418
Alignment:
Q  214 aacaatagaaccgctcattcctcaattctcattagca 250  Q
    |||||||||||| |||| |||||||||||||||||||    
T  13550382 aacaatagaacccctcaatcctcaattctcattagca 13550418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 24863506 - 24863534
Alignment:
Q  46 aattgaaattaaaaataagaagtgtaaga 74  Q
    |||||||||||||||||||||||||||||    
T  24863506 aattgaaattaaaaataagaagtgtaaga 24863534  T

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