View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_3 (Length: 663)
Name: NF7595_low_3
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 653
Target Start/End: Original strand, 41102155 - 41102790
Alignment:
| Q |
18 |
gttttagcagtgcctgagcttctctttgcatttcctccttctgatatgcagacaagagtaaaatatacatatcgcaacccattggagacccggcagcctc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41102155 |
gttttagcagtgcctgagcttctctttgcatttcctccttctgatatgcagacaagagtaaaatatacatatcgcaacccattggagacccggcagcctc |
41102254 |
T |
|
| Q |
118 |
tgcatcgtccaatatatcatgagcagactcaagccatcccatctgaatgcaagcactgatcacatcggaacacaacccagatcctgtcgctgagtatagt |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41102255 |
tgcatcgtccaaaatatcatgagcagactcaagccatcccatctgaatgcaagcactgatcacatcagaacacaacccagatcctgtcgctgagtatagt |
41102354 |
T |
|
| Q |
218 |
tccccttgaatgctaagtaaaagtttcgaaagttcactaattctaccatcttttttgtaaccaatgataaacttagccaaagctctattactaagagtaa |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41102355 |
tccccatgaatgctaagtaaaagtttcgaaagttcactaattctaccatcttttttgtaaccaatgataaacttagccaaagctctattactaagagtaa |
41102454 |
T |
|
| Q |
318 |
gtttcccacccttataaaaaacaagaccttctctaccttccaatttaagcacagtgtccttctgcagtagctcaggctctatatgtatctttaatgcatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41102455 |
gtttcccacccttataaaaaacaagaccttctctaccttccaatttaagcacagtgtccttctgcagtagctcaggctctatatgtatctttaatgcatt |
41102554 |
T |
|
| Q |
418 |
cttaaggttaggcgatccaatggcaacaaagctcggcttttgtaagtgattcctatattcttcattattgtgacaattatgcgagctattcatatccaaa |
517 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41102555 |
cttaaggttaggtgatccaatggcaacaaagctcggcttttgtaagtgattcctatattcttcattattgtgacaattatgcgagctattcatatccaaa |
41102654 |
T |
|
| Q |
518 |
acaagcttagaggcagcatcaatgtcgttaaatttaaagtgcaagctcaacaaactatcatagaactgacgatagtgccgaacataagacgccgaaactc |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
41102655 |
acaagcttagaggcagcatcaatgtcgttaaatttaaagtgcaacctcaacaaactatcatagaactgacgataatgccgaacataagacgccgaaactc |
41102754 |
T |
|
| Q |
618 |
catcaatatgacatttcaattccatcaattcatctc |
653 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41102755 |
catcaatatgacatttcaattccatcaattcatctc |
41102790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 26177978 - 26177823
Alignment:
| Q |
18 |
gttttagcagtgcctgagcttctctttgcatttcctccttctgatatgcagacaagagtaaaatatacatatcgcaacccattggagacccggcagcctc |
117 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
26177978 |
gttttagccgtgccttagcttctctttgcattccctccttctgatatgccgacgaatgtaaaatatacatattgaaacccattggagacccggcagcctc |
26177879 |
T |
|
| Q |
118 |
tgcatcgtccaatatatcatgagcagactcaagccatcccatctgaatgcaagcac |
173 |
Q |
| |
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||| |||||||| || |||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
26177878 |
tgcgtcgtccaaaatgtcatgagcggactcaagtcatcccatctgaatgcaagcac |
26177823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 650
Target Start/End: Complemental strand, 25944647 - 25944564
Alignment:
| Q |
567 |
acaaactatcatagaactgacgatagtgccgaacataagacgccgaaactccatcaatatgacatttcaattccatcaattcat |
650 |
Q |
| |
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|||||||||||| || |||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25944647 |
acaaactatcattaaattgacaataatgctgaacataagcagccgaaactccatcaatatgacatttcaattccatcatttcat |
25944564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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