View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7595_low_31 (Length: 246)

Name: NF7595_low_31
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7595_low_31
NF7595_low_31
[»] chr1 (3 HSPs)
chr1 (8-228)||(4520654-4520886)
chr1 (50-134)||(12900866-12900951)
chr1 (45-150)||(46502770-46502876)
[»] chr7 (4 HSPs)
chr7 (28-163)||(39773327-39773464)
chr7 (38-96)||(29346793-29346851)
chr7 (39-96)||(32471148-32471205)
chr7 (164-228)||(39773479-39773544)
[»] scaffold0274 (1 HSPs)
scaffold0274 (28-150)||(5275-5399)
[»] scaffold0271 (1 HSPs)
scaffold0271 (28-150)||(3891-4015)
[»] chr4 (3 HSPs)
chr4 (61-150)||(49272661-49272751)
chr4 (28-139)||(52723928-52724036)
chr4 (164-228)||(52723824-52723889)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 4520654 - 4520886
Alignment:
Q  8 cgaagaatattgaagaaattaaaagtctccttctccctttggtactcttcttcagagtaatgacttaagtctttgaactaagtcttcttttgtctttcta 107  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  4520654 cgaagaaaactgaagaaattaaaagtctccttcttcctttggtactctccttgagaataatgacttaagtctttgaactaagtcttcttttgtctttcta 4520753  T
Q  108 ctagttcttaagttgttaatttacattgtatttaatcaatttccctgtattgt------------attatacatagttatttcatctatttgttttgtat 195  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  4520754 ctagttctaaagttgttaatttacattgtatttaatcaatttccctgtattgtgtttttcagtgaattatacatagttatttcatctatttgttttgtat 4520853  T
Q  196 ttcactgtattcatcaattaaaagggctaaacc 228  Q
    ||||||| ||||||||| |||||||||||||||    
T  4520854 ttcactgcattcatcaactaaaagggctaaacc 4520886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 12900866 - 12900951
Alignment:
Q  50 tactcttcttcagagtaatgacttaagtctttgaactaagtcttcttttgtctttctactagtt-cttaagttgttaatttacatt 134  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||| | ||||||||||||||  ||||||||| ||||||||||    
T  12900866 tactcttcttgagagtaatggcttaggtctttgaactaagtcttcttctatctttctactagttgattaagttgtcaatttacatt 12900951  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 46502770 - 46502876
Alignment:
Q  45 tttggtactcttcttcagagtaatgacttaagtctttgaactaagtcttcttttgtctttctactagttc-ttaagttgttaatttacattgtatttaat 143  Q
    ||||||||||| ||| ||||||||| |||| ||||||  ||||||||||||| | | ||||||||| ||| ||||||||| |||||||||| ||||  ||    
T  46502770 tttggtactctccttgagagtaatggcttaggtctttagactaagtcttcttctatttttctactaattcattaagttgtcaatttacattttattcgat 46502869  T
Q  144 caatttc 150  Q
    |||||||    
T  46502870 caatttc 46502876  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 39773327 - 39773464
Alignment:
Q  28 aaaagtctccttctccctttggtactcttcttcagagtaatgacttaagtctttgaactaagtcttcttttgtctttctactagttc-ttaagttgttaa 126  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||  ||||||||||||| | ||||||||||||||| |||| |||| ||    
T  39773327 aaaagtctctttctccctttggtactctccttgagagtaatggcttaggtctttagactaagtcttcttctatctttctactagttcattaaattgtcaa 39773426  T
Q  127 tttacattgtatttaatcaatttc-cctgtattgtatt 163  Q
    |||||||| |||| |||||||||| | |||||||||||    
T  39773427 tttacattctattcaatcaatttctcttgtattgtatt 39773464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 29346851 - 29346793
Alignment:
Q  38 ttctccctttggtactcttcttcagagtaatgacttaagtctttgaactaagtcttctt 96  Q
    ||||||||||||||||||  || || ||||||||||||||||||| |||||||||||||    
T  29346851 ttctccctttggtactctctttgagggtaatgacttaagtctttggactaagtcttctt 29346793  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 32471205 - 32471148
Alignment:
Q  39 tctccctttggtactcttcttcagagtaatgacttaagtctttgaactaagtcttctt 96  Q
    ||||||||||||||||| |||  ||||||| ||||| ||||||||||| |||||||||    
T  32471205 tctccctttggtactctccttgcgagtaataacttatgtctttgaacttagtcttctt 32471148  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 39773479 - 39773544
Alignment:
Q  164 atacatagttatttcatctatttgttttgtatttcactgtattcatcaatta-aaagggctaaacc 228  Q
    ||||| |||||||||||| | |||||||||||| ||||  |||||||||||| ||||||| |||||    
T  39773479 atacaaagttatttcatccaattgttttgtattgcactacattcatcaattacaaagggccaaacc 39773544  T

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Target: scaffold0274 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 5399 - 5275
Alignment:
Q  28 aaaagtctccttctccctttggtactcttcttcagagtaatgacttaagtctttgaact-aagtcttcttttgtctttctactagttc-ttaagttgtta 125  Q
    |||||||||| ||||||||||||||||| ||| ||||||||| |||| ||||||  ||| ||||| |||| | ||||||||||||||| ||||||||| |    
T  5399 aaaagtctccatctccctttggtactctccttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtca 5300  T
Q  126 atttacattgtatttaatcaatttc 150  Q
    ||||||||| ||||||| |||||||    
T  5299 atttacattctatttaaacaatttc 5275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 3891 - 4015
Alignment:
Q  28 aaaagtctccttctccctttggtactcttcttcagagtaatgacttaagtctttgaact-aagtcttcttttgtctttctactagttc-ttaagttgtta 125  Q
    |||||||||| ||||||||||||||||| ||| ||||||||| |||| ||||||  ||| ||||| |||| | ||||||||||||||| ||||||||| |    
T  3891 aaaagtctccatctccctttggtactctccttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtca 3990  T
Q  126 atttacattgtatttaatcaatttc 150  Q
    ||||||||| ||||||| |||||||    
T  3991 atttacattctatttaaacaatttc 4015  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 49272661 - 49272751
Alignment:
Q  61 agagtaatgacttaagtctttgaactaagtcttcttttgtctttctactag-ttcttaagttgttaatttacattgtatttaatcaatttc 150  Q
    ||||||||||||||||| |||| ||||||||||||| | |||| ||||||| |||||||||||| |||||||| | ||||  |||||||||    
T  49272661 agagtaatgacttaagtttttggactaagtcttcttctatcttcctactagtttcttaagttgtcaatttacactttattcgatcaatttc 49272751  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 52724036 - 52723928
Alignment:
Q  28 aaaagtctccttctccctttggtactcttcttcagagtaatgacttaagtctttgaactaagtcttcttttgtctttctactagttc-ttaagttgttaa 126  Q
    ||||||||||||||| ||||||||||||   | |||||||||| ||| ||||||||||||| ||||||| | ||||| ||  ||||| ||||||||| ||    
T  52724036 aaaagtctccttctctctttggtactctc--tgagagtaatgatttaggtctttgaactaaatcttcttctatcttttta--agttcattaagttgtcaa 52723941  T
Q  127 tttacattgtatt 139  Q
    |||||||| ||||    
T  52723940 tttacattctatt 52723928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 52723889 - 52723824
Alignment:
Q  164 atacatagttatttcatctatttgttttgtatttcactgtattcatcaatta-aaagggctaaacc 228  Q
    ||||| |||||||||||| | |||||||||||||||||  |||||||||||| |||||||||||||    
T  52723889 atacaaagttatttcatccaattgttttgtatttcactacattcatcaattacaaagggctaaacc 52723824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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