View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7595_low_33 (Length: 245)

Name: NF7595_low_33
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7595_low_33
NF7595_low_33
[»] chr6 (2 HSPs)
chr6 (19-228)||(13552138-13552349)
chr6 (192-228)||(24062042-24062078)
[»] chr7 (3 HSPs)
chr7 (146-195)||(12597074-12597123)
chr7 (194-228)||(45022682-45022716)
chr7 (192-228)||(11321502-11321538)
[»] chr8 (3 HSPs)
chr8 (194-228)||(38804895-38804929)
chr8 (199-228)||(32889137-32889166)
chr8 (192-228)||(32889011-32889047)
[»] chr4 (6 HSPs)
chr4 (190-228)||(11974899-11974937)
chr4 (193-226)||(27866450-27866483)
chr4 (192-228)||(3729297-3729333)
chr4 (192-228)||(11333060-11333096)
chr4 (192-228)||(37144065-37144101)
chr4 (192-228)||(38001256-38001292)
[»] chr3 (5 HSPs)
chr3 (194-228)||(28096097-28096131)
chr3 (199-228)||(22102179-22102208)
chr3 (192-228)||(3422862-3422898)
chr3 (192-228)||(7116198-7116234)
chr3 (192-228)||(42897087-42897123)
[»] chr5 (1 HSPs)
chr5 (192-228)||(38938824-38938860)
[»] chr1 (1 HSPs)
chr1 (192-228)||(8007192-8007228)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 13552138 - 13552349
Alignment:
Q  19 cagactgcatacttggatgatttcccctattttaaaagaagaccctccaaaagtcttggctgagttcgtctcccaacatttcaaggagactggagttgta 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13552138 cagactgcatacttggatgatttcccctatttcaaaagaagaccctccagaagtgttggctgagttcgtctcccaacatttcaaggagactggagttgta 13552237  T
Q  119 --attcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatatctctactatatataaagaaaa 216  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  13552238 atattcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatatctctattataggtaaagaaaa 13552337  T
Q  217 ctatccctttca 228  Q
    ||| || |||||    
T  13552338 ctacccttttca 13552349  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 24062042 - 24062078
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||||||||||||||||||||||||||    
T  24062042 atatctatactatatataaagaaaactatccctttca 24062078  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 12597074 - 12597123
Alignment:
Q  146 aatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatat 195  Q
    ||||||||||||||| ||||| || ||||||||||||| |||||||||||    
T  12597074 aatgaatctgcaatccagcaaactaatatggcaaggacccaagctgatat 12597123  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 45022716 - 45022682
Alignment:
Q  194 atctctactatatataaagaaaactatccctttca 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  45022716 atctatactatatataaagaaaactatccctttca 45022682  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 11321538 - 11321502
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11321538 atatctatactatatataaagaaaactacccctttca 11321502  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 38804929 - 38804895
Alignment:
Q  194 atctctactatatataaagaaaactatccctttca 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  38804929 atctatactatatataaagaaaactatccctttca 38804895  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 32889137 - 32889166
Alignment:
Q  199 tactatatataaagaaaactatccctttca 228  Q
    ||||||||||||||||||||||||||||||    
T  32889137 tactatatataaagaaaactatccctttca 32889166  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 32889011 - 32889047
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  32889011 atatctatactatagataaagaaaactatccctttca 32889047  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 11974937 - 11974899
Alignment:
Q  190 tgatatctctactatatataaagaaaactatccctttca 228  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  11974937 tgatatctatactatatataaagaaaactacccctttca 11974899  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 27866483 - 27866450
Alignment:
Q  193 tatctctactatatataaagaaaactatcccttt 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  27866483 tatctatactatatataaagaaaactatcccttt 27866450  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 3729297 - 3729333
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| |||||||||||||||||||||||| |||||    
T  3729297 atatctatactatatataaagaaaactatccatttca 3729333  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 11333060 - 11333096
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11333060 atatctatactatatataaagaaaactacccctttca 11333096  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 37144101 - 37144065
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  37144101 atatctatactatatataaagaaaactacccctttca 37144065  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 38001256 - 38001292
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| |||||||||||||||||||| |||||||||    
T  38001256 atatctatactatatataaagaaaactgtccctttca 38001292  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 28096097 - 28096131
Alignment:
Q  194 atctctactatatataaagaaaactatccctttca 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  28096097 atctatactatatataaagaaaactatccctttca 28096131  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 22102179 - 22102208
Alignment:
Q  199 tactatatataaagaaaactatccctttca 228  Q
    ||||||||||||||||||||||||||||||    
T  22102179 tactatatataaagaaaactatccctttca 22102208  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 3422898 - 3422862
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| |||||||||||||||||||| |||||||||    
T  3422898 atatctatactatatataaagaaaactgtccctttca 3422862  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 7116234 - 7116198
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  7116234 atatctatactatatataaagaaaactacccctttca 7116198  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 42897123 - 42897087
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  42897123 atatctatactatatataaagaaaactacccctttca 42897087  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 38938860 - 38938824
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  38938860 atatctatactatatataaagaaaactacccctttca 38938824  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 8007192 - 8007228
Alignment:
Q  192 atatctctactatatataaagaaaactatccctttca 228  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  8007192 atatctatactatacataaagaaaactatccctttca 8007228  T

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