View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_34 (Length: 244)
Name: NF7595_low_34
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 42159210 - 42159433
Alignment:
| Q |
20 |
ggaaactcgtcgacgcccaactacgacgactgcttgttgatattgtcacctcatcccctgccaataccgatgccattttacaaactagtttctcaaacag |
119 |
Q |
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| T |
42159210 |
ggaaactcgtcgacgcccaactacgacgactgcttgttgatattgtcacctcatcccctgccaataccgatgccattttacaaactagtttctcaaacag |
42159309 |
T |
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| Q |
120 |
ataacatatatatcttcttactatatatagtagattag-------------ttttttctttctgaaatgatttttaaagtgcttcgtctatagcgactaa |
206 |
Q |
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| T |
42159310 |
ataacatatatatcttcttactatatatagtagattagtatgtatataattttttttctttctgaaatgatttttaaagtgcttcgtctatagcgactaa |
42159409 |
T |
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| Q |
207 |
agtttcctataagtagaataatgt |
230 |
Q |
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|||||||||||||||||| ||||| |
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| T |
42159410 |
agtttcctataagtagaagaatgt |
42159433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 42180184 - 42180284
Alignment:
| Q |
20 |
ggaaactcgtcgacgcccaactacgacgactgcttgttgatattgtcacctcatcccctgccaataccgatgccattttacaaactagtttctcaaacag |
119 |
Q |
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|||||||| ||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
42180184 |
ggaaactcatcgacttccaactccgactactacttgttgatattgtcacctcatcccctgccaatacggatgccattttactaactagtttctcaaacag |
42180283 |
T |
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| Q |
120 |
a |
120 |
Q |
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| T |
42180284 |
a |
42180284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 42146915 - 42146992
Alignment:
| Q |
38 |
aactacgacgactgcttgttgatattgtcacctcatcccctgccaataccgatgccattttacaaactagtttctcaa |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |
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| T |
42146915 |
aactccgacgactgcttgttgatattgtcacctcatcccttgccattaccgatgccattttactaactaatttctcaa |
42146992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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