View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_36 (Length: 236)
Name: NF7595_low_36
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 4652236 - 4652036
Alignment:
| Q |
20 |
actcaacgtccatcaatgagtcaagttgttataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaacaattctcgcagtttatga |
119 |
Q |
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| T |
4652236 |
actcaacgtccatcaatgagtcaagttgttataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaacaattctcgcagtttatga |
4652137 |
T |
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| Q |
120 |
gtgatcaagagtgtgaccaacatttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacattttttctcgaatat |
219 |
Q |
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| T |
4652136 |
gtgatcaagagtgtgaccaacatttcgaaagatcccacacctacaaggagagcacagcctcagcgagggcaagtactcaagaacattttttctcgaatat |
4652037 |
T |
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| Q |
220 |
t |
220 |
Q |
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| T |
4652036 |
t |
4652036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 4671203 - 4671137
Alignment:
| Q |
140 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaacatt |
206 |
Q |
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| T |
4671203 |
catttcgcaagatcccgcacctataaggagagcacaatctcagcgaggccaagtactcaagaacatt |
4671137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 4660373 - 4660318
Alignment:
| Q |
149 |
agatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaaca |
204 |
Q |
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| T |
4660373 |
agatcccacacctacaaggagagtacaatctcagcgaggccaagtactcaagaaca |
4660318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 4676583 - 4676520
Alignment:
| Q |
140 |
catttcgaaagatcccacacctacaaggagaacacagcctcagcaagggcaagtactcaagaac |
203 |
Q |
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| T |
4676583 |
catttcgcaagatcccacacctataaggagagcacagtctctacaagggcaagtcctcatgaac |
4676520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 4629625 - 4629545
Alignment:
| Q |
20 |
actcaacgtccatcaatgagtcaagttgttataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaa |
100 |
Q |
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| T |
4629625 |
actcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattggtagtgagtgaagaagatagccaa |
4629545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 4665651 - 4665571
Alignment:
| Q |
20 |
actcaacgtccatcaatgagtcaagttgttataggtttggagtatgcgttgcaaatggaggtgagtgaagaaggtagccaa |
100 |
Q |
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| T |
4665651 |
actcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattggtagtgagtgaagaagatagccaa |
4665571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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