View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7595_low_38 (Length: 219)

Name: NF7595_low_38
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7595_low_38
NF7595_low_38
[»] chr7 (11 HSPs)
chr7 (1-151)||(5307286-5307436)
chr7 (19-91)||(21880200-21880272)
chr7 (12-89)||(20549832-20549909)
chr7 (19-90)||(598256-598327)
chr7 (12-90)||(1433495-1433578)
chr7 (14-89)||(32287404-32287479)
chr7 (20-90)||(7438766-7438836)
chr7 (25-90)||(5409771-5409836)
chr7 (19-92)||(24339701-24339774)
chr7 (42-90)||(29763129-29763177)
chr7 (42-90)||(43027404-43027452)
[»] chr4 (16 HSPs)
chr4 (19-90)||(16073442-16073513)
chr4 (39-93)||(29205536-29205590)
chr4 (19-90)||(23292926-23292997)
chr4 (30-92)||(715543-715605)
chr4 (30-92)||(752869-752931)
chr4 (42-88)||(22440559-22440605)
chr4 (19-90)||(16184879-16184950)
chr4 (19-90)||(28964188-28964259)
chr4 (19-89)||(30982808-30982878)
chr4 (54-92)||(36635413-36635451)
chr4 (12-70)||(40179596-40179654)
chr4 (42-87)||(28084595-28084640)
chr4 (39-92)||(47264065-47264118)
chr4 (25-89)||(3947702-3947766)
chr4 (42-90)||(18513175-18513223)
chr4 (42-90)||(19482750-19482798)
[»] chr3 (14 HSPs)
chr3 (12-90)||(40993275-40993353)
chr3 (19-90)||(41961579-41961650)
chr3 (19-92)||(20503513-20503586)
chr3 (12-83)||(3631725-3631796)
chr3 (19-90)||(8039764-8039835)
chr3 (19-70)||(10955000-10955051)
chr3 (19-90)||(55401123-55401194)
chr3 (42-88)||(25775578-25775624)
chr3 (12-90)||(35222979-35223057)
chr3 (42-90)||(8071014-8071062)
chr3 (12-89)||(8789489-8789568)
chr3 (42-90)||(25074866-25074914)
chr3 (42-90)||(34185052-34185100)
chr3 (42-90)||(40052383-40052431)
[»] chr6 (11 HSPs)
chr6 (19-90)||(4877991-4878061)
chr6 (19-90)||(10339054-10339125)
chr6 (41-90)||(13360313-13360362)
chr6 (19-90)||(8365448-8365519)
chr6 (15-90)||(13364645-13364720)
chr6 (19-90)||(16766756-16766827)
chr6 (19-90)||(28152146-28152217)
chr6 (19-90)||(28715343-28715414)
chr6 (12-93)||(7265530-7265611)
chr6 (19-92)||(34595182-34595255)
chr6 (19-87)||(32978842-32978910)
[»] chr1 (16 HSPs)
chr1 (12-90)||(37598872-37598950)
chr1 (42-90)||(2218299-2218347)
chr1 (42-90)||(15765829-15765877)
chr1 (42-90)||(16164244-16164292)
chr1 (12-60)||(21530730-21530778)
chr1 (18-90)||(32461393-32461465)
chr1 (19-91)||(38078600-38078672)
chr1 (19-90)||(22515827-22515898)
chr1 (19-90)||(47989556-47989627)
chr1 (42-88)||(16297223-16297269)
chr1 (44-90)||(18556385-18556431)
chr1 (19-89)||(40258874-40258944)
chr1 (39-92)||(5944362-5944415)
chr1 (19-88)||(42359391-42359460)
chr1 (42-90)||(29144320-29144368)
chr1 (54-90)||(34741929-34741965)
[»] chr2 (13 HSPs)
chr2 (19-88)||(2438661-2438730)
chr2 (12-89)||(28596510-28596587)
chr2 (20-92)||(26769571-26769643)
chr2 (19-90)||(37419802-37419873)
chr2 (15-81)||(18571016-18571082)
chr2 (12-90)||(20242667-20242745)
chr2 (19-68)||(12224271-12224320)
chr2 (19-90)||(18840953-18841024)
chr2 (12-90)||(34993922-34994000)
chr2 (42-91)||(10535684-10535733)
chr2 (12-68)||(5367233-5367289)
chr2 (42-90)||(15909570-15909618)
chr2 (10-70)||(37411204-37411264)
[»] chr5 (9 HSPs)
chr5 (12-68)||(30502350-30502406)
chr5 (12-68)||(30542693-30542749)
chr5 (12-90)||(17123089-17123166)
chr5 (12-90)||(28588614-28588692)
chr5 (15-87)||(39268541-39268613)
chr5 (19-90)||(21576685-21576756)
chr5 (39-85)||(35904737-35904783)
chr5 (12-90)||(43564922-43565000)
chr5 (42-90)||(2436982-2437030)
[»] scaffold0050 (1 HSPs)
scaffold0050 (12-87)||(70319-70394)
[»] scaffold0793 (1 HSPs)
scaffold0793 (30-92)||(4819-4881)
[»] scaffold0450 (1 HSPs)
scaffold0450 (19-92)||(8562-8635)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-92)||(241653-241726)
[»] scaffold0697 (1 HSPs)
scaffold0697 (12-60)||(1685-1733)
[»] chr8 (9 HSPs)
chr8 (39-90)||(18407787-18407838)
chr8 (15-70)||(44462155-44462210)
chr8 (15-70)||(44469688-44469743)
chr8 (12-90)||(33405324-33405402)
chr8 (42-90)||(8343038-8343086)
chr8 (42-90)||(8343398-8343446)
chr8 (18-90)||(9945299-9945371)
chr8 (42-90)||(30067968-30068016)
chr8 (42-90)||(36450694-36450742)
[»] scaffold0004 (1 HSPs)
scaffold0004 (24-89)||(92875-92940)
[»] scaffold0057 (1 HSPs)
scaffold0057 (42-90)||(24108-24155)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 5307286 - 5307436
Alignment:
Q  1 acataattatgattatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagatattatatt 100  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  5307286 acataattgtgattatatgtgtcagtgtcatacaagatagatgtgcgacactaggacacgcctaatccaaggagtgtacgtgcttcatagatattatatt 5307385  T
Q  101 acaaaattcaaatnnnnnnntgtagttgcttaatcataatagacttaacat 151  Q
    |||||||||||||         |||||||||||||||||||||||||||||    
T  5307386 acaaaattcaaataaaaaaaattagttgcttaatcataatagacttaacat 5307436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 21880200 - 21880272
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcataga 91  Q
    |||||||||||| ||| || ||||||||||||| ||||||||||||||||||  ||||| |||||||||||||    
T  21880200 gtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 20549832 - 20549909
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    ||||||||||||||||||| |||  | |||||||||||| |  ||||||||||||||||  ||||  |||||||||||    
T  20549832 attatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 598256 - 598327
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||  ||| || || ||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 1433495 - 1433578
Alignment:
Q  12 attatatgtgtcggtgtcgt-----acaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||||||||||     |||||| |  |||||||||| |||||||| |||||||||  ||||| ||||||||||||    
T  1433495 attatatgtgtcggtgtcgtgtcggacaagacatgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 32287479 - 32287404
Alignment:
Q  14 tatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    ||||||||||||||||| ||| || |  ||||||||||  |||||| ||||||||||  ||||| |||||||||||    
T  32287479 tatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 7438766 - 7438836
Alignment:
Q  20 tgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  ||| || |||||| ||||||||||||||||||||| | |  ||||| ||||||||||||    
T  7438766 tgtcggtgtcaaacacgacacatgtgcgacactaggacacgcctaattcaaggagtgtccgtgcttcatag 7438836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 5409836 - 5409771
Alignment:
Q  25 gtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||| ||| || || ||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 24339701 - 24339774
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    |||||||||||| ||| || || | ||||||||  |||||||||||||||||  ||||  ||||||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagat 24339774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 29763177 - 29763129
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||  ||||||||||||||||||  ||||| ||||||||||||    
T  29763177 tgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 43027452 - 43027404
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  43027452 tgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 16073442 - 16073513
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||||  ||||| | ||||||||||    
T  16073442 gtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 29205536 - 29205590
Alignment:
Q  39 acatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagata 93  Q
    |||||||||||||| |||||||||||||||||  ||||| |||||||||||||||    
T  29205536 acatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagata 29205590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 23292997 - 23292926
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || || ||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  23292997 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 715605 - 715543
Alignment:
Q  30 gtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    ||||| || |||||||||||||  |||||||||||||||||  ||||| ||||||||||||||    
T  715605 gtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 752931 - 752869
Alignment:
Q  30 gtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    ||||| || |||||||||||||  |||||||||||||||||  ||||| ||||||||||||||    
T  752931 gtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 752869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 22440605 - 22440559
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcat 88  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||    
T  22440605 tgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 16184879 - 16184950
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| | | ||| | ||||||||||| |||||||||||||||||  |||||  |||||||||||    
T  16184879 gtgtcggtgtcgcatacgatgcctgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 28964259 - 28964188
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||| |||||| ||| || |||| ||||||||| |||||||||||||||||  ||||| | ||||||||||    
T  28964259 gtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatag 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30982878 - 30982808
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    |||||||||||  ||| || || ||||||||||  ||||||||||||||| || ||||| |||||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 36635413 - 36635451
Alignment:
Q  54 ggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  36635413 ggacacgcctaatccgaagagtgtccgtgcttcatagat 36635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 40179654 - 40179596
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccga 70  Q
    |||||||| |||||||||| ||| || |||||| |||||| | ||||||||||||||||    
T  40179654 attatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccga 40179596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 28084595 - 28084640
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttca 87  Q
    ||||||||||| |||||||||||||||||  ||||| |||||||||    
T  28084595 tgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 47264065 - 47264118
Alignment:
Q  39 acatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    ||||||| ||||| ||||||||||||||||||| || ||  |||||||||||||    
T  47264065 acatgtctgacaccaggacacgcctaatccgaagagcgtctgtgcttcatagat 47264118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 3947766 - 3947702
Alignment:
Q  25 gtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    |||||| ||| || || |||||||||| ||||||| ||||||||||  ||||| |||||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 18513223 - 18513175
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||| ||||||||||||||| ||  ||||| ||||||||||||    
T  18513223 tgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 19482750 - 19482798
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||| |||||| ||||||||||  ||||| ||||||||||||    
T  19482750 tgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 40993353 - 40993275
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||||||||| ||| || |||||||||||||  |||||||||||||||||  ||||| | ||||||||||    
T  40993353 attatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 41961650 - 41961579
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||| ||| ||| || || ||||||||||| |||||||||||||||||  ||||| ||||||||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 20503513 - 20503586
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    |||||||||| | ||| || ||||||| |||||  |||||||||||||||||  ||||| ||||||||||||||    
T  20503513 gtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagat 20503586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 3631725 - 3631796
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgc 83  Q
    |||||||||| | |||||| ||| || ||||||||||||| |||||||||||| |||||  ||||| |||||    
T  3631725 attatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtgc 3631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 8039835 - 8039764
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || |||||||||||||  |||||||| ||||||||| ||| |  |||||||||||    
T  8039835 gtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagtatctgtgcttcatag 8039764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 10955000 - 10955051
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccga 70  Q
    |||||||||||| ||| || || ||||||||||| |||||||||||||||||    
T  10955000 gtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccga 10955051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 55401123 - 55401194
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || || ||||||||||   ||||||||||||||||  ||||| ||||||||||||    
T  55401123 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 25775578 - 25775624
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcat 88  Q
    |||||||||| ||||||||||||||||||  ||||| ||||||||||    
T  25775578 tgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 35222979 - 35223057
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||||||||| ||| || || |||| |||||  |||||||| | ||||||  ||||| ||||||||||||    
T  35222979 attatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcatag 35223057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 8071062 - 8071014
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||| |||||||||||||||| || |||||| |||| ||||||    
T  8071062 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 8071014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 8789568 - 8789489
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagataca--tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    ||||||||||||||||||| ||| || |||  |||| |||||   ||||||||||||||||  ||||| |||||||||||    
T  8789568 attatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 25074866 - 25074914
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||| |||||| ||||||||||  ||||| ||||||||||||    
T  25074866 tgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 34185100 - 34185052
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  34185100 tgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 40052383 - 40052431
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  40052383 tgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 4877991 - 4878061
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || ||||||||||||| ||||||||||||||||||  ||||| ||||||||||||    
T  4877991 gtgtcggtgtcggacacgacacatgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 10339125 - 10339054
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || |||||||||||||| |||||||||||||| ||  ||||| ||||||||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 13360362 - 13360313
Alignment:
Q  41 atgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||  ||||||||||||||||| ||||| ||||||||||||    
T  13360362 atgtccgacactgagacacgcctaatccgaagagtgtccgtgcttcatag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 8365519 - 8365448
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||| ||| ||| || || ||||||||||| |||||||||||||||||  ||| | ||||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 13364720 - 13364645
Alignment:
Q  15 atatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||||| | ||| |||||||||| ||||| |||||||| ||| |||||  |||||  |||||||||||    
T  13364720 atatgtgtcggtgttggacacgatacatgtctgacaccaggacacgtctattccgacgagtgtctgtgcttcatag 13364645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 16766756 - 16766827
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| |||  | || ||||||||||  |||||||||||||||||| | ||| ||||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 28152146 - 28152217
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || || ||||||||||  ||||| |||||||||||  ||||| ||||||||||||    
T  28152146 gtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 28715343 - 28715414
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || || ||| ||||||  ||||||||||||| |||  ||||||||||||||||||    
T  28715343 gtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 7265611 - 7265530
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagata 93  Q
    ||||||||||||||||||| |||  |||||||||||||||  | | | |||||||||||  || || |||||||||| ||||    
T  7265611 attatatgtgtcggtgtcggacacaatacatgtccgacaccggaatatgcctaatccgaggagcgtccgtgcttcattgata 7265530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 34595182 - 34595255
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    |||||||||||| ||| || || |||| |||||  |||||| ||||||||||  ||||| ||||||||||||||    
T  34595182 gtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatagat 34595255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 32978910 - 32978842
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttca 87  Q
    |||||||||||| ||| || |||||||||||||  ||||||| ||||||| |  ||||| |||||||||    
T  32978910 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 37598872 - 37598950
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||| |||||||||||| ||| || || ||||||||| | |||||||||||||||||  ||||| ||||||||||||    
T  37598872 attataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 2218299 - 2218347
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||||    
T  2218299 tgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 15765829 - 15765877
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||| |||||| |||||||||||||||||| ||||| ||||||||||||    
T  15765829 tgtctgacactgggacacgcctaatccgaagagtgtccgtgcttcatag 15765877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 16164292 - 16164244
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||| ||||||||||||||||||| |||||| ||| |||||||    
T  16164292 tgtccgacaccaggacacgcctaatccgaagagtgtatgtgtttcatag 16164244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 21530730 - 21530778
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacg 60  Q
    |||||| |||||||||||| ||| || ||||||||||||||||||||||    
T  21530730 attataagtgtcggtgtcggacacgacacatgtccgacactaggacacg 21530778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  18 tgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||| ||| || || |||| |||||| ||||||||||||||| |  ||||| ||||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 38078672 - 38078600
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcataga 91  Q
    |||||||||||| ||| || |||||| | |||| ||||||||||||||||||  ||| | |||||||||||||    
T  38078672 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcataga 38078600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 22515898 - 22515827
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || |||| ||||||||   ||||||||||||||||  ||||| ||||||||||||    
T  22515898 gtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 47989556 - 47989627
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| || ||||||| ||||   |||||||||||||||||  ||||| ||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 16297269 - 16297223
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcat 88  Q
    |||||||||| ||||||||||||||||||  ||||| ||||||||||    
T  16297269 tgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 18556431 - 18556385
Alignment:
Q  44 tccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||| |||||||||||||||||  ||||| ||||||||||||    
T  18556431 tccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 40258944 - 40258874
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    |||||||||||  ||| || || |||||||||| ||||||||||||||||||  ||||| | |||||||||    
T  40258944 gtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 5944362 - 5944415
Alignment:
Q  39 acatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    |||||||||||||  ||| |||||||||||||  ||||| ||||||||||||||    
T  5944362 acatgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatagat 5944415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42359460 - 42359391
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcat 88  Q
    |||||||||||| ||||||    ||||||||||  |||||||||||||||||  ||||| ||||||||||    
T  42359460 gtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 29144368 - 29144320
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  | |||||||||||||||| ||||| ||||||||||||    
T  29144368 tgtccgacaccggaacacgcctaatccgaagagtgtccgtgcttcatag 29144320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 34741929 - 34741965
Alignment:
Q  54 ggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34741929 ggacacgcctaatccgaagagtgtccgtgcttcatag 34741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 2438730 - 2438661
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcat 88  Q
    |||||||||||| ||| || |||||||||||||  |||||||||||||||||  ||||| ||||||||||    
T  2438730 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 28596510 - 28596587
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    |||||| |||||||||||| ||| || || ||||||||||| |||||| ||||||||||  ||||| |||||||||||    
T  28596510 attataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26769571 - 26769643
Alignment:
Q  20 tgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    ||||||| ||| ||| || || ||||||||||| |||||||||||||||||  ||||| ||||||||||||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 37419802 - 37419873
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| ||| ||| | ||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 18571016 - 18571082
Alignment:
Q  15 atatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgt 81  Q
    ||||||||| |||||| ||| ||||||| |||||||| ||||||||||||||| ||| ||| |||||    
T  18571016 atatgtgtcagtgtcgaacacgatacatatccgacaccaggacacgcctaatctgaagagtatacgt 18571082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 20242745 - 20242667
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||||||||| |||  | || |||| ||||| ||||||||||| ||||||| |||||  |||||||||||    
T  20242745 attatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcatag 20242667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 12224271 - 12224320
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatcc 68  Q
    |||||||||||| ||| ||||| ||||||||||| |||||||||||||||    
T  12224271 gtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatcc 12224320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 18841024 - 18840953
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||  ||| || |||||||||||||  |||||| ||||||||||  ||||| ||||||||||||    
T  18841024 gtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 34994000 - 34993922
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||||| |||||| ||| || |  ||||||||||| ||||||||||||| | |  ||||| ||||||||||||    
T  34994000 attatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatag 34993922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 10535733 - 10535684
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcataga 91  Q
    |||| ||||| ||||||||||||||||||  ||||| |||||||||||||    
T  10535733 tgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcataga 10535684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 5367233 - 5367289
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatcc 68  Q
    ||||||||||||||||||| ||| || |||| |||||| |  |||||||||||||||    
T  5367233 attatatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatcc 5367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 15909618 - 15909570
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  ||||||||||||| |||| ||||| ||||||||||||    
T  15909618 tgtccgacacagggacacgcctaattcgaagagtgttcgtgcttcatag 15909570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 37411264 - 37411204
Alignment:
Q  10 tgattatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccga 70  Q
    ||||||||||||||| ||||| ||| ||  | ||||||||||| ||||||||||| |||||    
T  37411264 tgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccga 37411204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 30502406 - 30502350
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatcc 68  Q
    ||||||||||||||||||| ||| || |||||||||||||| ||||| |||||||||    
T  30502406 attatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatcc 30502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 30542749 - 30542693
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatcc 68  Q
    ||||||||||||||||||| ||| || |||||||||||||| ||||| |||||||||    
T  30542749 attatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatcc 30542693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 17123089 - 17123166
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||| ||||||||| | ||| || |||||||||||||  |||||||||||||||||  ||||| ||||||||||||    
T  17123089 attatatatgtcggtgttggacacgaaacatgtccgacacg-ggacacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 28588692 - 28588614
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||| |||||||||||| ||| || |||| || ||||| ||||||||| ||||||||| ||||| | ||||||||||    
T  28588692 attataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcatag 28588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 39268613 - 39268541
Alignment:
Q  15 atatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttca 87  Q
    |||||||||||||| | ||| || |  ||||||||||| |||||||||||||||||  ||||| |||||||||    
T  39268613 atatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 21576756 - 21576685
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||| ||||| ||| || || |||| |||||| |||||||||||||||||  ||||| ||||||||||||    
T  21576756 gtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 35904737 - 35904783
Alignment:
Q  39 acatgtccgacactaggacacgcctaatccgaacagtgtacgtgctt 85  Q
    ||||||||||||||||||||||| ||||||||  ||||| |||||||    
T  35904737 acatgtccgacactaggacacgcttaatccgataagtgtccgtgctt 35904783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 43564922 - 43565000
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||| |||||||||||| ||| || |  |||||||| |  |||||||||||||||||  ||||| ||||||||||||    
T  43564922 attataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 2436982 - 2437030
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||| | ||||||||||||||||  ||||| ||||||||||||    
T  2436982 tgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 70319 - 70394
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttca 87  Q
    |||||| |||||||||||| ||| || || |||||||||| |||||| |||||||||||  ||||| |||||||||    
T  70319 attataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 4881 - 4819
Alignment:
Q  30 gtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    ||||| || |||||||||||||  |||||||||||||||||  ||||| ||||||||||||||    
T  4881 gtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 8635 - 8562
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    |||||||| ||| ||| ||||| ||||||||||| | ||||||||||| |||  ||||| ||||||||||||||    
T  8635 gtgtcggtatcggacacgatacgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatagat 8562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 241653 - 241726
Alignment:
Q  19 gtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatagat 92  Q
    |||| ||||||| ||| || || ||||||||||  |||||||||||||||||  ||||| ||||||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagat 241726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1685 - 1733
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacg 60  Q
    |||||| |||||||||||| ||| || ||||||||||||||||||||||    
T  1685 attataagtgtcggtgtcggacacgacacatgtccgacactaggacacg 1733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 18407787 - 18407838
Alignment:
Q  39 acatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||||||||||||||||||  ||  ||||| ||||||||||||    
T  18407787 acatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatag 18407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 44462210 - 44462155
Alignment:
Q  15 atatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccga 70  Q
    |||||||||||||||  ||| ||||||||||||||||  ||||||| |||||||||    
T  44462210 atatgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccga 44462155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 44469743 - 44469688
Alignment:
Q  15 atatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccga 70  Q
    |||||||||||||||  ||| ||||||||||||||||  ||||||| |||||||||    
T  44469743 atatgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccga 44469688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 33405402 - 33405324
Alignment:
Q  12 attatatgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||||||||| ||| || ||||||| |||||  ||||||| ||||||| |  ||||| |||||| |||||    
T  33405402 attatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtgctccatag 33405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 8343038 - 8343086
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  |||||||||||||||||| |||||  |||||||||||    
T  8343038 tgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 8343398 - 8343446
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||  |||||||||||||||||| |||||  |||||||||||    
T  8343398 tgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 9945299 - 9945371
Alignment:
Q  18 tgtgtcggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||||  ||| ||||||| |||||||| |||| |||||| ||||||| ||| ||  ||||||||||    
T  9945299 tgtgtcggtgtcagacatgatacatatccgacaccaggagacgccttatccgaagagtatatttgcttcatag 9945371  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 30068016 - 30067968
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||| |||||| ||||||||||  ||||| ||||||||||||    
T  30068016 tgtccgacactgggacacacctaatccgatgagtgtccgtgcttcatag 30067968  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 36450742 - 36450694
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    |||||||||| ||||||||||||||||||  |||||  |||||||||||    
T  36450742 tgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 92875 - 92940
Alignment:
Q  24 ggtgtcgtacaagatacatgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcata 89  Q
    ||||||| ||| || ||||||| |||||  |||||||||||||||||  ||||| |||||||||||    
T  92875 ggtgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 24108 - 24155
Alignment:
Q  42 tgtccgacactaggacacgcctaatccgaacagtgtacgtgcttcatag 90  Q
    ||||||||||| |||||||||||||||||  ||||| ||||||||||||    
T  24108 tgtccgacact-ggacacgcctaatccgatgagtgtccgtgcttcatag 24155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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