View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_39 (Length: 218)
Name: NF7595_low_39
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 51861397 - 51861580
Alignment:
| Q |
19 |
aattttatggtttggttattttattatctcattactttcccctaatatannnnnnnncgcgaattggtgttttcctaaaattgaaataatattcaaattt |
118 |
Q |
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| T |
51861397 |
aattttatggtttggttattttattatctcattactttcccctaatat--ttttttccgcgaattggtgttttcctaaaattgaaagaatatttaaattt |
51861494 |
T |
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| Q |
119 |
cccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaacaattcatgggatcgatttcttct |
204 |
Q |
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| T |
51861495 |
cccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcagggataaacaattcatggagtcgatttcttct |
51861580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 22158603 - 22158435
Alignment:
| Q |
19 |
aattttatggtttggttattttattatctcattactttcccctaatatannnnnnnncgcgaattggtgttttcctaaaattgaaataatattcaaattt |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22158603 |
aattttatggtttggttattttatgatctcattactttcccctaatatattttttt-cgcgaattggtgttttcctaaaattgaaagaatattcaaattt |
22158505 |
T |
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| Q |
119 |
cccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaacaattcat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
22158504 |
cccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcaggaataaacaattcat |
22158435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 9333609 - 9333485
Alignment:
| Q |
79 |
gaattggtgttttcctaaaattgaaataatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggata |
178 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9333609 |
gaattggtgttttcctaaaattgaaagaatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggata |
9333510 |
T |
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| Q |
179 |
aacaattcatgggatcgatttcttc |
203 |
Q |
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| T |
9333509 |
aacaattcatggggtcgatttcttc |
9333485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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