View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_8 (Length: 478)
Name: NF7595_low_8
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 238 - 460
Target Start/End: Complemental strand, 11610909 - 11610698
Alignment:
| Q |
238 |
taaaaataaattattaaatttgaatatttgaattactacttgacagatcctatatagctctgcataagctcaaggaggattgaatatcgatctctatcat |
337 |
Q |
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| T |
11610909 |
taaaaataaattattaaatttgaatatttgaagtactacttgacagatcctatatagctctgcataagctcaaggaggattaaatattgatctggatcat |
11610810 |
T |
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| Q |
338 |
cgagatatcatattgaagatctctctggtgtctgacatgtgtcagtatcatcgatagaacatcaacacatatagttacgctcgaacacttcaacttaatt |
437 |
Q |
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| T |
11610809 |
ggaaatatcatattgaagatctctct-----------agtgtcagtgtcatcgatagaacatcaacacatatagttacgctcaaacacttcaacttaatt |
11610721 |
T |
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| Q |
438 |
ataactaatgtctacgtgtctct |
460 |
Q |
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| T |
11610720 |
ataactaatgtctacgtgtctct |
11610698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 11611660 - 11611528
Alignment:
| Q |
27 |
caataaacaactctgattgagtctagcagaagaggttagtcataaacctctatacgaattcatgctttcggaggtgcctatagttagtgaagattcctct |
126 |
Q |
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| T |
11611660 |
caataaacaactctgattgagtctagcagaagaggttagtcagaaacctctatacgaattcatgctttcggaggtgcctatagttagtgatgattcctct |
11611561 |
T |
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| Q |
127 |
aacatagatttttctgccagatcagggttctat |
159 |
Q |
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| T |
11611560 |
aacatagatttttcttgcagatctgggttctat |
11611528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 11611213 - 11611157
Alignment:
| Q |
187 |
tatacagtaatatcaaacaaagttcagaaccacatttaatgtctatttttctaaaaa |
243 |
Q |
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| T |
11611213 |
tatacagtaatatcaaacaaacttcagaaccatatttaatgtctatttttttaaaaa |
11611157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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