View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7595_low_9 (Length: 465)
Name: NF7595_low_9
Description: NF7595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7595_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 181 - 450
Target Start/End: Original strand, 14592241 - 14592510
Alignment:
| Q |
181 |
ttttgttttactgttaatagacaaggtcgtagtggcgatcttgctttattttgaaaatctacacagttaattgttcaatcccaaacaactctactctaat |
280 |
Q |
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| T |
14592241 |
ttttgttttactgttaatagacaaggtcgtagtggcgatcttgctttattttgaaaatctacacagttaattgttcaatcccaaacaactctactctaat |
14592340 |
T |
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| Q |
281 |
aatcatatagatgctaaagtggtgaatattaacaacggaaattgctgtctaacgggttattccgttttttcagaaaatagaagaagaaagaatatttgac |
380 |
Q |
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| T |
14592341 |
aatcatatagatgttaaagtggtgaatattaacaagggaaattgctgtctaacggattattccattttttcaaaaaatagaagaagaaagaatgtttgac |
14592440 |
T |
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| Q |
381 |
aatttttacgacaaccgtcaaatatttctaataccatggtgtattttggatgattttaaggacattattt |
450 |
Q |
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| T |
14592441 |
aatttttacgacaaccgtcaaatatttctaataccgtggtgaattttggatgattttaaggacattattt |
14592510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 14591752 - 14591877
Alignment:
| Q |
14 |
atcatgagttggaatcgtcgatgaataggtagtccgcgtgcatttcctagtttgaagtaccttgagggagaagatccactccactggaaatttcctccgg |
113 |
Q |
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| T |
14591752 |
atcatgagttggaattgtcgatgaataggtagtccgcatacatttcctagtttgaagtacctcgagggagaggatccactccagtggaaatttcctcc-t |
14591850 |
T |
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| Q |
114 |
gttttctcttgtgaaataatcttagcc |
140 |
Q |
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| T |
14591851 |
gttttctcctgtgaaataatcttagcc |
14591877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 14591941 - 14591981
Alignment:
| Q |
143 |
caagttcattcatttcttttcttcccttcgtcacgttgttt |
183 |
Q |
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| T |
14591941 |
caagttcattcatttcttttcttcccttcctcacgttgttt |
14591981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 19828723 - 19828768
Alignment:
| Q |
143 |
caagttcattcatttcttttcttcccttcgtcacgttgttttgttt |
188 |
Q |
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| T |
19828723 |
caagttcattcatttctttccttctcttcctcacgttgtttcgttt |
19828768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 404
Target Start/End: Original strand, 22906277 - 22906491
Alignment:
| Q |
183 |
ttgttttactgttaatagacaaggtcgtagtggcgatcttgctttattttgaaaatctacacagttaattgttcaatcccaaacaactctactctaataa |
282 |
Q |
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||||||||||||||| |||||||||||||||| | ||||| |||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| |
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| T |
22906277 |
ttgttttactgttaaccgacaaggtcgtagtggaggtcttgtgttattttggaaatctaca--gttaattgttccattacaaac-----tactcaaataa |
22906369 |
T |
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| Q |
283 |
tcatatagatgctaaagtggtgaatattaacaacggaaattgctgtctaacgggttattccgttttttcagaaaatagaagaagaaagaatatttgacaa |
382 |
Q |
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||||||||||||| |||||||| |||| | || ||||| || || |||| ||||||| | |||| |||||||||| ||||| || || ||| ||| |
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| T |
22906370 |
tcatatagatgctcaagtggtggatatgagtaaaggaaaatggcgtttaactggttattatggttttccagaaaatagtagaaggaaagatgcttggcaa |
22906469 |
T |
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| Q |
383 |
tttttacgacaaccgtcaaata |
404 |
Q |
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||||||||||||| |||||||| |
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| T |
22906470 |
tttttacgacaactgtcaaata |
22906491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 40396940 - 40396880
Alignment:
| Q |
79 |
gggagaagatccactccactggaaatttcctccgggttttctcttgtgaaataatcttagcc |
140 |
Q |
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| T |
40396940 |
gggagaggatccactccagtggaaattttctcctg-ttttctcctgtgaaataatcttagcc |
40396880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 50232665 - 50232625
Alignment:
| Q |
143 |
caagttcattcatttcttttcttcccttcgtcacgttgttt |
183 |
Q |
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| T |
50232665 |
caagttgattcatttcttttcttcccttcctcacgttgttt |
50232625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 50052889 - 50052929
Alignment:
| Q |
143 |
caagttcattcatttcttttcttcccttcgtcacgttgttt |
183 |
Q |
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| T |
50052889 |
caagttcattcatttcttttctttccttcctcacattgttt |
50052929 |
T |
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