View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_high_6 (Length: 485)
Name: NF7596_high_6
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 12741531 - 12741803
Alignment:
| Q |
18 |
caaatcagtgtcctggactttttaccttattttttggatgaccacataactgatgccatcaaaattctatgagtcacactcaattagttttgaactgcca |
117 |
Q |
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| T |
12741531 |
caaatcagagtcctaga-ttttcacattatttcttggatgaccacataactgatcccatcaaaattctatgagtcacactcaattagttttgaactgcca |
12741629 |
T |
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| Q |
118 |
tgaattttgcaaaagatcgatcctaaaatatggtagaagaaacgctcacataaacacttttattcgctgccatatttggacatttgtttaatcatgtgaa |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12741630 |
tgaattttgcaactgatcgatcctaaaatatggtagaagaaacgctcacataaacaattttattcgctgccatatttggacatttgtttaatcatgtgaa |
12741729 |
T |
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| Q |
218 |
tttgattcgcaataattttatgactgaagcaaatatctacgtgatcagtgtgcatacaagttttaaaatggttt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12741730 |
tttgattcgcaataattttatgactgaagcaaatatctacgtgatcagtgtgcatacaagttttaaaatggttt |
12741803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 323 - 463
Target Start/End: Original strand, 12741794 - 12741934
Alignment:
| Q |
323 |
aaaatggttttgaatttatcactattaatttctaaattttacaagatatgcatttttccggtgagttggtttagaaaattaattgttttccattttgctt |
422 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12741794 |
aaaatggttttgaatttatcactattaatttccaaattttacaagatatgcagtttttcggtgagttggtttagaaaattaattgttttccattttactt |
12741893 |
T |
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| Q |
423 |
gtgaatttgattcaaaagcttcctgtatatttgatagagat |
463 |
Q |
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| T |
12741894 |
gtgaatttgattcaaaagcctcctgtatatttgatagagat |
12741934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 329 - 463
Target Start/End: Original strand, 17196393 - 17196527
Alignment:
| Q |
329 |
gttttgaatttatcactattaatttctaaattttacaagatatgcatttttccggtgagttggtttagaaaattaattgttttccattttgcttgtgaat |
428 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196393 |
gttttcaatttatcactattaatttccaaattttacaagatatgcattttttcgatgagttggtttagaaaattaattgttttccattttgcttgtgaat |
17196492 |
T |
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| Q |
429 |
ttgattcaaaagcttcctgtatatttgatagagat |
463 |
Q |
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| T |
17196493 |
ttgattcaaaagctttctgtatatttgatagagat |
17196527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 17196278 - 17196389
Alignment:
| Q |
18 |
caaatcagtgtcctggactttttaccttattttttggatgaccacataactgatgccatcaaaattctatgagtcacactcaattagttttgaactgcca |
117 |
Q |
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|||||||| ||||| || |||| || |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196278 |
caaatcagagtcctagaattttcacgttatttcttggatgaccacgtaactgatcccatcaaaattctatgagtcacactcaattagttttgaactgcca |
17196377 |
T |
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| Q |
118 |
tgaattttgcaa |
129 |
Q |
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|||||||||||| |
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| T |
17196378 |
tgaattttgcaa |
17196389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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