View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_high_8 (Length: 385)
Name: NF7596_high_8
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 28599612 - 28599796
Alignment:
| Q |
11 |
catcaccagaaataccatccatgttatcactaccagatctgcagctttcatgttcttcttcttctctattccttctcaaaccattatttgtttgatgaaa |
110 |
Q |
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| T |
28599612 |
catcaccagaaataccatccatgttatcactaccagatctgcagctttcatgttcttcttcttctctattccttctcaaaccattatttgtttgatgaaa |
28599711 |
T |
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| Q |
111 |
attctcagccattaatctcttcatatcaccaccttgtgcttctaaatttgtttgctgtaatattcaatatttcccaaacaagaac |
195 |
Q |
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| T |
28599712 |
attctcagccattaatctcttcatatcaccaccttgtgcttctaaatttgtttgctgtaatattcaatatttcccaaacaagaac |
28599796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 262 - 385
Target Start/End: Original strand, 28599859 - 28599982
Alignment:
| Q |
262 |
ctcttacaagtgctaaagatagaccagatgagttgaacatggatttaaccaaagtaggagttgataaacgaggttgtgagattgcactagaaggcattac |
361 |
Q |
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| T |
28599859 |
ctcttacaagtgctaaagatagaccagatgagttgaacatggatttaaccaaagtaggagttgataaacgaggttgtgagattgcactagaaggcattat |
28599958 |
T |
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| Q |
362 |
tctacttattgtcaccaaaactca |
385 |
Q |
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| T |
28599959 |
tctacttattgtcaccaaaactca |
28599982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 12327337 - 12327376
Alignment:
| Q |
11 |
catcaccagaaataccatccatgttatcactaccagatct |
50 |
Q |
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| T |
12327337 |
catcaccagaaacaccatccaagttatcactaccagatct |
12327376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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