View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_low_1 (Length: 741)
Name: NF7596_low_1
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 44847877 - 44847428
Alignment:
| Q |
19 |
atcaggtccaagcagaaacttcagataggcatttgatatctgcatggataatgatcctaggtatcagtcactatcatcttccaagattcagataaagaag |
118 |
Q |
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| T |
44847877 |
atcaggtccaagcagaaacttcagataggcatttgatatctgcatggataatgatcctaggtatcagtcactatcatcttccaagattcagataaagaaa |
44847778 |
T |
|
| Q |
119 |
gactagtatannnnnnnnnaataaaaagtgagttaatgtatacgaaggggacttatttatgttaagtaactaaaatttactgatgcaattaatgttaaaa |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44847777 |
gactagtatatttttttttaataaaaagtgagttaatgtatacgaaggggacttatttatgttaagtaactaaaatttactgatgcaattaatgttaaaa |
44847678 |
T |
|
| Q |
219 |
ttttcaatattgtaactcaatgctggatgtacgtcatatcatgatcatagtttcgctaacttcttctattcaaattatgcattttcgaagaagtgataac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44847677 |
ttttcaatattgtaactcaatgctggatgtacgtcatatcatgatcatagtttcgctaacttcttctattcaaattatgcattttcgaagaagtaataac |
44847578 |
T |
|
| Q |
319 |
tgagccatttgttttgccagtccaaatgtattctgatgctaatgaatcaattacatgttttactttatgtatatataaaattaaaaaactaaagattcgt |
418 |
Q |
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| T |
44847577 |
tgagccatttgttttgccagtccaaatgtattctgatgctaatgaatcaattacatgttttactttatgtatatataaaattaaaaaactaaagattcgt |
44847478 |
T |
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| Q |
419 |
accacaggcttccaagttgcatgctctttctaagttgagatagagtttta |
468 |
Q |
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| T |
44847477 |
accacaggcttccaagttgcatgctctttctaagttgagatagagtttta |
44847428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 515 - 681
Target Start/End: Complemental strand, 44847375 - 44847209
Alignment:
| Q |
515 |
atatccattattagagatttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44847375 |
atatccattattagagatttaggataacatcagcaaggaagatgaaacgattaaaacaggttttagatttataccagattgacagaacgaggaatccgca |
44847276 |
T |
|
| Q |
615 |
acaatccaaccttgcgggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
681 |
Q |
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| T |
44847275 |
acaatccaaccttgcgggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
44847209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 44861489 - 44861167
Alignment:
| Q |
23 |
ggtccaagcagaaacttcagataggcatttgatatctgcatggataatgatcctaggtatcagtcactatcatcttccaagattcagataaagaaggact |
122 |
Q |
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|||||| ||||||||| || ||||||||||||||||| ||| | |||||| |||| ||| ||||||| | |||||||| ||||||||||||||| ||| |
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| T |
44861489 |
ggtccacgcagaaactgcaagtaggcatttgatatctgtatgcagaatgatgctagatataagtcactgttatcttcca-gattcagataaagaaagacc |
44861391 |
T |
|
| Q |
123 |
agtatannnnnnnnnaataaaaagtgagttaatgtatacgaaggggacttat--ttatgttaagtaactaaaatttactgatgcaattaatgttaaaatt |
220 |
Q |
| |
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|||| ||||||||||| | ||||||||| | | ||| ||| |||||||| |||| ||||||||| ||||||||||| |||||||||| |
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| T |
44861390 |
catatattcttat--aataaaaagtgggaaaatgtatacaaggaggaactatcattatgttaggtaagtaaaatttagtgatgcaattagtgttaaaatt |
44861293 |
T |
|
| Q |
221 |
ttcaatattgtaactcaatgctggatgtacgtcatatcatgatcatagtttcgctaacttcttctattcaaattatgcattttcgaagaagtgataactg |
320 |
Q |
| |
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| |||||| |||||||||||||| || ||| ||||||||||| ||||| |||| |||||| |||||||||||||||||| |||| || ||||||| |
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| T |
44861292 |
tgcaatatagtaactcaatgctgcatctac-----atcatgatcatggtttcactaatttcttccattcaaattatgcattttggaagttgtaataactg |
44861198 |
T |
|
| Q |
321 |
agccatttgttttgccagtccaaatgtattc |
351 |
Q |
| |
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| | || |||||||||||||||| ||||| |
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| T |
44861197 |
aagaagtttttttgccagtccaaatctattc |
44861167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 44896755 - 44896663
Alignment:
| Q |
24 |
gtccaagcagaaacttcagataggcatttgatatctgcatggataatgatcctaggtatcagtcactatcatcttccaagattcagataaaga |
116 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||| || |||||||||| |
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| T |
44896755 |
gtccacgcagaaactgcaggtaggcatttgatatctgcatgcataatgatgctaggtatcagtccctattatcttccaatatacagataaaga |
44896663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 379
Target Start/End: Complemental strand, 44871881 - 44871701
Alignment:
| Q |
204 |
caattaatgttaaaattttcaatattgtaactcaatgctggatgtacgtcatatcatgatcatagtttcgctaacttcttctattcaaattatgcatttt |
303 |
Q |
| |
|
|||||| | ||||||||| ||||| |||| |||||| || |||||| ||||| ||||||||||||| | ||||||| ||| |||||||||||||||||| |
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| T |
44871881 |
caattagtattaaaatttgtaatatagtaagtcaatgttgtatgtacatcataccatgatcatagttccactaactttttccattcaaattatgcatttt |
44871782 |
T |
|
| Q |
304 |
cgaag-----aagtgataactgagccatttgttttgccagtccaaatgtattctgatgctaatgaatcaattacatgtttt |
379 |
Q |
| |
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||| || |||| ||||| | || ||||||||||| |||| ||||| ||||||||||||||| |||||||||| |
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| T |
44871781 |
gaaagttgtattgtaataagtgagcaagtttttttgccagtcaaaatctattcctatgctaatgaatcaagtacatgtttt |
44871701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 560 - 619
Target Start/End: Complemental strand, 44860199 - 44860140
Alignment:
| Q |
560 |
aacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgcaacaat |
619 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
44860199 |
aacaattaaaataggttttagatatataccagatttacagaacgaggaatccgcaacaat |
44860140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 44879297 - 44879203
Alignment:
| Q |
23 |
ggtccaagcagaaacttcagataggcatttgatatctgcatggataatgatcctaggtatcagtcactatcatcttccaagattcagataaagaa |
117 |
Q |
| |
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|||||| ||||||||| ||| ||||||||||||||||| ||| | |||||| |||| ||||||||||||| ||||||| || || |||||||||| |
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|
| T |
44879297 |
ggtccacgcagaaactgcaggtaggcatttgatatctgtatgcagaatgatgctagatatcagtcactattatcttccgagcttaagataaagaa |
44879203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 521 - 619
Target Start/End: Complemental strand, 44896259 - 44896161
Alignment:
| Q |
521 |
attattagagatttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgcaacaat |
619 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| |||| ||| ||||||||| || |||||| ||||||| ||| | |||||||||||| ||||||||| |
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| T |
44896259 |
attattagggatttaggatagcagcagcaaggaggatgcaaccattaaaacaagtgttagatatataccaaatttatagaacgaggaattcgcaacaat |
44896161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 531 - 603
Target Start/End: Complemental strand, 44870959 - 44870887
Alignment:
| Q |
531 |
atttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacg |
603 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
44870959 |
atttaggataacaatggcaaggaatatgcaacaattaaaacaggttttagatttataccagatttacaaaacg |
44870887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 44835981 - 44835928
Alignment:
| Q |
23 |
ggtccaagcagaaacttcagataggcatttgatatctgcatggataatgatcct |
76 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||| ||||||||||| |
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|
| T |
44835981 |
ggtccaagcagaaactgcaggtaagcatttgatatctgcatgcataatgatcct |
44835928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 681
Target Start/End: Complemental strand, 44896128 - 44896078
Alignment:
| Q |
631 |
ggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
681 |
Q |
| |
|
|||||| || |||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
44896128 |
ggttgacttgtaccatacagtgacgttgaatccattctcattcgaatttag |
44896078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 44896601 - 44896540
Alignment:
| Q |
179 |
gttaagtaactaaaatttactgatgcaattaatgttaaaattttcaatattgtaactcaatg |
240 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||| || ||| |||||| |||| |||||| |
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|
| T |
44896601 |
gttatgtaattaaaatttactgatgcaattagtgttgaattttgcaatatagtaagtcaatg |
44896540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 22637776 - 22637715
Alignment:
| Q |
30 |
gcagaaacttcagataggcatttgatatctgcatggataatgatcctaggtatcagtcacta |
91 |
Q |
| |
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||||||||| || || |||||||||||||||||| || |||||||||| |||||||||||| |
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|
| T |
22637776 |
gcagaaactgcaagtaagcatttgatatctgcatgcatgatgatcctagatatcagtcacta |
22637715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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