View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_low_11 (Length: 356)
Name: NF7596_low_11
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 53660960 - 53661291
Alignment:
| Q |
15 |
cagagaggatactcaatcacttact----atacattattgactccaaaagttaagtaaatctattttctttccatcttctgccaaaactcaatcactt-- |
108 |
Q |
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| T |
53660960 |
cagagaggatactcaatcacttacttactatacattattgactccaaaagttaagtaaatctattttctttccatcttctgccaaaactcaatcacttct |
53661059 |
T |
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| Q |
109 |
-agtaacttgaatcgccaatcaactttagtttccatatataatcagatagaggacatgcaataacttatccaacaggaattccatcgacaaatataaaca |
207 |
Q |
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| T |
53661060 |
tagtaacttgtatcgccaatcaactttagtttccatatataatcagatagaggacatgcaataacttatccaacaggaattccattgacaaatataaacc |
53661159 |
T |
|
| Q |
208 |
gacagcatcaactaaaatacaataagccagtaaaatttaaaagtaatcaatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53661160 |
gacagcatcaactaaaatacaataagccagtaaaatttaaaagtaatcaatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtc |
53661259 |
T |
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| Q |
308 |
ccggtgtatgatatcattctgatgcaaatatt |
339 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
53661260 |
ccggtgtatgatatcattctgatgcaaatatt |
53661291 |
T |
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