View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_low_12 (Length: 342)
Name: NF7596_low_12
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 325
Target Start/End: Complemental strand, 25255469 - 25255147
Alignment:
| Q |
2 |
cctggagacctacttagagtcattgttattgagtaggaacattaatatgacgtgtcatnnnnnnnnngcaacttaaatatcatttccttgagattttatt |
101 |
Q |
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| T |
25255469 |
cctggagacctacttagagtcattgttattgagtaggaacattaatatgacgtgtcataaaaaaaa-gcaacttaaatatgatttccttgagattttatt |
25255371 |
T |
|
| Q |
102 |
ttttccctttcaattaatggtcaaaattatattggttgacttgctgnnnnnnnagtcagacaatggtaaatttggcacctgggggttgcgctgttggcat |
201 |
Q |
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| T |
25255370 |
ttttccctttcaattaatggtcaaaatcatattggttgacttgctctttttttattcagacaatggtaaatttggcacctgggggttgcgctgttggcat |
25255271 |
T |
|
| Q |
202 |
tcctctcctttatttcactgcaatcttgaccttaattcattgtgggaggatggtttggagaagattgacagaaaacccaatcagaccaagtcactcgtag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25255270 |
tcctctcctttatttcactgcaatcttgaccttaattcattgtgggaggatggtttggagaagattgacagaaaacccaatcagaccaagtcactcgtag |
25255171 |
T |
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| Q |
302 |
taagtgataatcttatgtaaattt |
325 |
Q |
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|||||||||||||||||||||||| |
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| T |
25255170 |
taagtgataatcttatgtaaattt |
25255147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 25166679 - 25166784
Alignment:
| Q |
219 |
ctgcaatcttgaccttaattcattgtgggaggatggtttggagaagattgacagaaaacccaatca----gaccaagtcactcgtagtaagtgataatct |
314 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| |||||| ||||||||| |
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| T |
25166679 |
ctgcgatcttgaccttaattcattgtgggaggatgatttggagaagaatgacagaaaacacaatcagatcgaccaagtcactcatagtaattgataatct |
25166778 |
T |
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| Q |
315 |
tatgta |
320 |
Q |
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| |||| |
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| T |
25166779 |
tttgta |
25166784 |
T |
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